Gene loci information

Transcript annotation

  • This transcript has been annotated as 26S proteasome regulatory subunit 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7951 g7951.t3 TSS g7951.t3 27179950 27179950
chr_2 g7951 g7951.t3 isoform g7951.t3 27180053 27181086
chr_2 g7951 g7951.t3 exon g7951.t3.exon1 27180053 27180738
chr_2 g7951 g7951.t3 cds g7951.t3.CDS1 27180341 27180738
chr_2 g7951 g7951.t3 exon g7951.t3.exon2 27180800 27181086
chr_2 g7951 g7951.t3 cds g7951.t3.CDS2 27180800 27181085
chr_2 g7951 g7951.t3 TTS g7951.t3 27181627 27181627

Sequences

>g7951.t3 Gene=g7951 Length=973
ATGACGGCCTCGTCTAAGGTAAGTTATTGAATATTAATTCAAATAAATTTAACACGAAAG
ATTAATGGAAGACATAAAACTTTAGATGGAAATTGATCAACAGCGAGGCGAAGGTTTTCG
CAATTATTACATTCAAAAAATTGAAGAATTACAGTTGATAGTTAATGAAAAGAGTCAGAA
CCTTCGTCGTCTTCAAGCACAACGTAATGAGTTGAATGCAAAAGGTAATAAAATTATAAT
TTAAAATTTTATTTTTAAATTTTATTTTTTCTTATCATTTCAGTTCGAATGTTGCGTGAA
GAACTGCAATTGCTGCAAGAACAAGGAAGTTATGTTGGAGAAGTAGTGAAACCAATGGAT
AAGAAGAAAGTATTAGTAAAAGTTCATCCAGAGGGAAAGTTTGTTGTCGATTTAGACAAG
AACATTGACATCAATGATGTTACTCCAAATTCTCGGGTTGCTCTAAGAAATGAGAGTTAC
ACTTTGCACAAGATTCTACCAAATAAGGTTGATCCATTAGTTTCACTCATGATGGTCGAG
AAAGTTCCGGACTCAACTTATGAAATGGTTGGTGGTTTAGATAAACAAATTAAGGAAATT
AAAGAAGTCATTGAATTGCCAGTAAAACATCCAGAATTATTTGATGCTCTTGGTATTGCT
CAACCAAAAGGTGTCTTATTATATGGTCCGCCAGGTACTGGTAAAACTCTTCTCGCTCGT
GCGGTTGCTCATCACACAGAATGTACTTTCATTCGTGTTTCTGGATCTGAACTTGTTCAG
AAGTTTATAGGAGAGGGCTCACGTATGGTTCGAGAATTATTCGTAATGGCAAGAGAACAT
GCACCTTCCATCATTTTTATGGATGAAATTGATTCTATCGGTTCATCTCGTATTGAATCT
GGCAGCGGTGGTGATTCTGAAGTACAACGAACAATGTTGGAATTACTTAATCAGCTTGAT
GGTTTCGAAGCAA

>g7951.t3 Gene=g7951 Length=228
MLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNSRVALR
NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDA
LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVM
AREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7951.t3 CDD cd00009 AAA 95 227 0
8 g7951.t3 Gene3D G3DSA:2.40.50.140 - 1 81 0
7 g7951.t3 Gene3D G3DSA:3.40.50.300 - 82 228 0
3 g7951.t3 PANTHER PTHR23073 26S PROTEASOME REGULATORY SUBUNIT 1 228 0
4 g7951.t3 PANTHER PTHR23073:SF102 BNAA02G04630D PROTEIN 1 228 0
1 g7951.t3 Pfam PF16450 Proteasomal ATPase OB C-terminal domain 16 71 0
2 g7951.t3 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 129 227 0
6 g7951.t3 SMART SM00382 AAA_5 125 223 0
5 g7951.t3 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 82 227 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0036402 proteasome-activating activity MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values