General information for g7959.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g7959 is located on chr_2: 27240688..27242359 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7959 | g7959.t2 | TSS | g7959.t2 | 27238916 | 27238916 |
| chr_2 | g7959 | g7959.t2 | isoform | g7959.t2 | 27239094 | 27240049 |
| chr_2 | g7959 | g7959.t2 | exon | g7959.t2.exon1 | 27239094 | 27239184 |
| chr_2 | g7959 | g7959.t2 | cds | g7959.t2.CDS1 | 27239094 | 27239184 |
| chr_2 | g7959 | g7959.t2 | exon | g7959.t2.exon2 | 27239341 | 27239718 |
| chr_2 | g7959 | g7959.t2 | cds | g7959.t2.CDS2 | 27239341 | 27239718 |
| chr_2 | g7959 | g7959.t2 | exon | g7959.t2.exon3 | 27239780 | 27240049 |
| chr_2 | g7959 | g7959.t2 | cds | g7959.t2.CDS3 | 27239780 | 27240048 |
| chr_2 | g7959 | g7959.t2 | TTS | g7959.t2 | 27240161 | 27240161 |
Sequences
>g7959.t2 Gene=g7959 Length=739
ATGACGAAAATTGGCGCAAATAATCTCAAAACAAGGAATTCAAAAGTCTCAAATATGAAT
GTTTGGAAGAAAAACAACGATTCAAGTGCAGATATAAAAACAAAAAATTCTGAAGAAACA
GTGAAAGTAGAAATGTCTGAAAATTTTATTATGGAATCAACACTAAATAACAACATTTTA
ATGGATCTCGATAAAGAAATTAAAAAGGAAAATGAAGCAAATTCTGATAATGAAATTACA
TCTGATCTTTCATCAGGTGATAATGAACATGAAACAGTTGAAGATAAACATTCAGTGATA
TCTGACACTGATAGTGCTTTAAGTTCGATAAATACAATTGGTTCAGTCAAAAGTGACCCA
TCAAATGTCACTGACAATAATTTATATGTAGGCAAAATTGTTTGGGGCTCATTTAGTAAA
CTCAATTGGTTTCCATGTATGATTTATTCAATTGAAGGATGCAATGACAATAAAGTACTT
GTCAAATATTTTAGTTATGGTGGCTTTAAAGCTTATCTGCCAACACGCAACATTTTTGAC
TTTGAAGGTATGGAAGAATTTTGGCATGAAATCACACAAATTCGTAAAATCAAGCGATCA
AAAATTACTTTATCCAAAACATGTCGTCGTGCAATTGAAGAAGCAAGATGCTTCACAACC
TTTCCCATTTATGATCGTATAAAAATTTATGACACAAGTGTTGAACTACAAAAGAAATTT
ACAAATTTAGAAAAATTTG
>g7959.t2 Gene=g7959 Length=246
MTKIGANNLKTRNSKVSNMNVWKKNNDSSADIKTKNSEETVKVEMSENFIMESTLNNNIL
MDLDKEIKKENEANSDNEITSDLSSGDNEHETVEDKHSVISDTDSALSSINTIGSVKSDP
SNVTDNNLYVGKIVWGSFSKLNWFPCMIYSIEGCNDNKVLVKYFSYGGFKAYLPTRNIFD
FEGMEEFWHEITQIRKIKRSKITLSKTCRRAIEEARCFTTFPIYDRIKIYDTSVELQKKF
TNLEKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7959.t2 | Gene3D | G3DSA:2.30.30.140 | - | 118 | 220 | 2.6E-8 |
| 4 | g7959.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 99 | - |
| 3 | g7959.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 99 | - |
| 1 | g7959.t2 | Pfam | PF00855 | PWWP domain | 130 | 216 | 2.1E-7 |
| 2 | g7959.t2 | SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 123 | 223 | 2.26E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
