Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7963 g7963.t2 isoform g7963.t2 27292919 27294139
chr_2 g7963 g7963.t2 exon g7963.t2.exon1 27292919 27294139
chr_2 g7963 g7963.t2 cds g7963.t2.CDS1 27292919 27294139
chr_2 g7963 g7963.t2 TSS g7963.t2 27294532 27294532
chr_2 g7963 g7963.t2 TTS g7963.t2 NA NA

Sequences

>g7963.t2 Gene=g7963 Length=1221
ATGATGGCCATATTTATGCCAACGGACTTTAAGAGCTTGAGTATAAACAATTTTCTTAAA
CTTCAATATCCGTCGCAAATTGCAGCTAATGAAAGTCACTTTAGATCGCATTTCAATATT
GGCGTTGTAGAGTCAGCTATGTCAAATGTTGTCAGTGGTCCATTGCCACATCAACCGCCA
ACGATGATGACCAGTGAAGTTATGAGTGATCAGAATGTGAAAGTAAGACTGTGTTCAGAA
GATGATAGTAATAGCAATGACAGTGACTTGTCAGTAGGACAAGAGAAAGTTCTCAATGAG
CAGAACGAATCGAATAATAATGTAAATGTGAAAGAACCTGTGAGTTCTGATGTTGATGAT
GAAGAGATGAGCAATGCATCATCATCACAATATACAAATAGTTCAACACGATTATGTAGT
CCACAGAACTCTAATGAGATTATGCGACCAATACATTTCCATGAAGAGATTATTAGAAGT
TCACAAATTTATGCAGAAGAACTATTGAGACAGCGAATTGCTGCTGCTGCTCGTCTTCAA
AGTGTTGCAAATGAATCAAAAAATCACAGTTTAGACGAACCTGAACCATCGATAATTTCT
AAATTAAATTTTCAATCAGGCATGTTTTCCGCAACTTCAAAACACACCGCCGACAACAGC
AGCAATGCCGAAAATGGCAGCGGGAATAATTTGTTTTGTGCCAAAAGTGCCATAAATTTT
TCAAACATTCACTCACATCTCAGTGCAATTTCCCAGATTACTCATAATCTAGGTGGCAAT
ATGAAAAAGGACGATGCAACAAGCTTAAGTAGCCTTTCGCGCGAGAGCTCACAATCGCCA
TCGGGCTTTCAACAATTTAAGCAGCGCGGTTTTCACACGGCCTCGTCCATTCATCAAAAT
CAATTTCATGATCATAGTTTAAAATTTAGTATCGATAATATATTAAAGGCTGATTTTGGT
CGTAGAATTACCGAGCCCCTGCTGAAAACATCGAGATTAAAACGAAATATTCGGGGCGAA
GGAAAGCATGAAAAAGAAAAGATCAATAAGTTTACTGACATGGAGACATTACAACAACAA
AAAGAACCTCATAATAGTACTGTGACAAAAGACAAATCTTTAGATCAATCGTATTCTTCA
TCAGCCGAAACATCAAAAGGCGATGCTGGATCAAGTAGTGCTCCCGGATCATCGAGTGGA
GGAACAGTGTGGCCAGCATGG

>g7963.t2 Gene=g7963 Length=407
MMAIFMPTDFKSLSINNFLKLQYPSQIAANESHFRSHFNIGVVESAMSNVVSGPLPHQPP
TMMTSEVMSDQNVKVRLCSEDDSNSNDSDLSVGQEKVLNEQNESNNNVNVKEPVSSDVDD
EEMSNASSSQYTNSSTRLCSPQNSNEIMRPIHFHEEIIRSSQIYAEELLRQRIAAAARLQ
SVANESKNHSLDEPEPSIISKLNFQSGMFSATSKHTADNSSNAENGSGNNLFCAKSAINF
SNIHSHLSAISQITHNLGGNMKKDDATSLSSLSRESSQSPSGFQQFKQRGFHTASSIHQN
QFHDHSLKFSIDNILKADFGRRITEPLLKTSRLKRNIRGEGKHEKEKINKFTDMETLQQQ
KEPHNSTVTKDKSLDQSYSSSAETSKGDAGSSSAPGSSSGGTVWPAW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g7963.t2 MobiDBLite mobidb-lite consensus disorder prediction 98 113 -
7 g7963.t2 MobiDBLite mobidb-lite consensus disorder prediction 98 142 -
4 g7963.t2 MobiDBLite mobidb-lite consensus disorder prediction 120 142 -
6 g7963.t2 MobiDBLite mobidb-lite consensus disorder prediction 264 284 -
2 g7963.t2 MobiDBLite mobidb-lite consensus disorder prediction 336 352 -
3 g7963.t2 MobiDBLite mobidb-lite consensus disorder prediction 336 407 -
5 g7963.t2 MobiDBLite mobidb-lite consensus disorder prediction 353 400 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed