General information for g7973.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7973 is located on chr_2: 27430219..27431646 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7973 | g7973.t4 | isoform | g7973.t4 | 27430219 | 27431646 |
| chr_2 | g7973 | g7973.t4 | exon | g7973.t4.exon1 | 27430219 | 27430745 |
| chr_2 | g7973 | g7973.t4 | cds | g7973.t4.CDS1 | 27430220 | 27430745 |
| chr_2 | g7973 | g7973.t4 | exon | g7973.t4.exon2 | 27430807 | 27431023 |
| chr_2 | g7973 | g7973.t4 | cds | g7973.t4.CDS2 | 27430807 | 27430865 |
| chr_2 | g7973 | g7973.t4 | exon | g7973.t4.exon3 | 27431529 | 27431646 |
| chr_2 | g7973 | g7973.t4 | TSS | g7973.t4 | 27431655 | 27431655 |
| chr_2 | g7973 | g7973.t4 | TTS | g7973.t4 | NA | NA |
Sequences
>g7973.t4 Gene=g7973 Length=862
AGATCCAATCAAGAAACTTTAAAACTTTGCGTCTATATTTTGCTAAAAAACTATTTTATG
GAGTAATTTATTAGAAAAAAAGTAAAACAATTGATAAGACTGGTTAATTATTATATAGAA
TTCTTCTCGCATTAAATTAGTATATTGTAAAAAGTCGCAGTCTTGTATATTTTATATAGA
ATATCAAGTGACTTTTTGACTGCCACTAGTCTAAATTTTAAAGAATAAAAAAGTAAAAGT
TAGTTTAGTTAAGTACAAATATTAAACAAATTAAAAATGGCAACAACCAGAGCATCGATG
AACATTGCAGCAAATTCAAAGAAAGCAATCACAGGAAAACGCAAGGCTGAGGCGAGTCCC
TTGAAAAATGATCGAGTAAAGAGATGTGCATTAACAAACCTGACAAATAATTTGAAAAAT
GAAACAGAAGACATTTCAAAGAAAGCTGTGCTGAAAGACATACAGCCAGTGAGCTATAGA
ACAAGAGCTGCGGCAGCTGCCGCTACAACTACAAATCCAATCGAATTAGTTGCTCCTATT
AAACCAATAGCTAAACCTCAAAAGAAGCAGCCAAAGACAATTAATGAAAACTTAGATAAA
AATTTGAAGAACAAGGCAATTGCAACCACTGTAGTGAAATCAAAGTCAACCGGCGAAATA
ACAGGAAAGCAATCAATATCAACACGTCGTATTTCCAATGAATTTGAAAGAACCGAGGAT
AGTCTCTATGTATCAGCACTTGAGGAAATACCATCGGACATTTCTCGACTTTCTGACAAA
ACAAAAAGCAGTATCGACACTACTGCATCTCAAATATCTGTGGTAAGCTCATCATCTTCG
TTAGAATCACAAAATGAAATTG
>g7973.t4 Gene=g7973 Length=195
MATTRASMNIAANSKKAITGKRKAEASPLKNDRVKRCALTNLTNNLKNETEDISKKAVLK
DIQPVSYRTRAAAAAATTTNPIELVAPIKPIAKPQKKQPKTINENLDKNLKNKAIATTVV
KSKSTGEITGKQSISTRRISNEFERTEDSLYVSALEEIPSDISRLSDKTKSSIDTTASQI
SVVSSSSSLESQNEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7973.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 1 | g7973.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 195 | - |
| 2 | g7973.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 195 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
