General information for g7976.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7976 is located on chr_2: 27435452..27440035 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7976 | g7976.t2 | isoform | g7976.t2 | 27433421 | 27434743 |
| chr_2 | g7976 | g7976.t2 | exon | g7976.t2.exon1 | 27433421 | 27433909 |
| chr_2 | g7976 | g7976.t2 | cds | g7976.t2.CDS1 | 27433783 | 27433909 |
| chr_2 | g7976 | g7976.t2 | exon | g7976.t2.exon2 | 27433975 | 27434143 |
| chr_2 | g7976 | g7976.t2 | cds | g7976.t2.CDS2 | 27433975 | 27434143 |
| chr_2 | g7976 | g7976.t2 | exon | g7976.t2.exon3 | 27434419 | 27434743 |
| chr_2 | g7976 | g7976.t2 | cds | g7976.t2.CDS3 | 27434419 | 27434461 |
| chr_2 | g7976 | g7976.t2 | TSS | g7976.t2 | NA | NA |
| chr_2 | g7976 | g7976.t2 | TTS | g7976.t2 | NA | NA |
Sequences
>g7976.t2 Gene=g7976 Length=983
ACTCACGAATATTTATTTAAAAAGATATTTTTACATTTATGTACTTACCATAAAAATCTC
GTACTAACAACTCTATCTAGAAAATATTGATGGCCTTACATTTTATTGCTTTTGCATTTT
TATTAAAAGAAAATTATATTTTGTTAATTTTTTAACATTTTTATAAAGTCTTCATGTTAA
TAAAATTTATAAATGTGTATTATCAAAAAAAGTTAGTTAATCAATAATTTTAATTATGAC
ACTTTGGAACAAAACTTTGATAGGATTACGCTTTCAAGAAAACATGAAAGTTTTATGTGC
TTTTTGAAAATTTATACTGTAGGTAAAGAAAATATGCAGATAATGCATAAGCAATCATAT
CGATGATGCCTACAAATCCCGCAGCAATATTTCTTCCAGTGACTCTTTCAGACCGTCCAA
ACCATGTGATTAACTGCACGATCGAGGCAAGAAATAATAAAGTAGAGGCAATGAAAAAGT
TTACAAATTCACTCAGTGACCAGTTGATTGGCAAATTCAAGACATCTCGAATACCCAAGA
AGTGTGCAACTGACCATAAAATTGTACATATGAAAGTGAGGACGATTGCGAATAAAAAAA
AGTGTGTGCCACTGAGAAACGCCGGAGATGCGAGTATCATGCATATGATGGCGAGAATCA
ATTGTGCTAGCTTCAATACACCATCAGTATGTTTAAAATAGTTAAAGTTAAATTGTATCC
ATCTTAAATCTGCAGCATCATAATTATTAGTACTGCCTGCACGATGTGATGATGATTGAT
TTAAACTGATGACAGTTTCTGACATTTTTATTATTTTATTAGTAATTCTCAATTGTCAAT
TCACAAATAATTGAATAATTTATTCTTTATTTATATTTGAACCGTCCTTATTTTAAAGTA
TAATATTAAAACAACAGCTGACAGTGGTAAACTTTAAAGACAACTGAAACTGGTTTAATG
AAAACGAAAATGCGAAGTAACAA
>g7976.t2 Gene=g7976 Length=112
MMPTNPAAIFLPVTLSDRPNHVINCTIEARNNKVEAMKKFTNSLSDQLIGKFKTSRIPKK
CATDHKIVHMKVRTIANKKKCVPLRNAGDASIMHMMARINCASFNTPSVCLK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed