Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7976 g7976.t31 isoform g7976.t31 27433444 27434743
chr_2 g7976 g7976.t31 exon g7976.t31.exon1 27433444 27433909
chr_2 g7976 g7976.t31 cds g7976.t31.CDS1 27433783 27433909
chr_2 g7976 g7976.t31 exon g7976.t31.exon2 27433975 27434157
chr_2 g7976 g7976.t31 cds g7976.t31.CDS2 27433975 27434157
chr_2 g7976 g7976.t31 exon g7976.t31.exon3 27434431 27434743
chr_2 g7976 g7976.t31 cds g7976.t31.CDS3 27434431 27434456
chr_2 g7976 g7976.t31 TSS g7976.t31 NA NA
chr_2 g7976 g7976.t31 TTS g7976.t31 NA NA

Sequences

>g7976.t31 Gene=g7976 Length=962
GATATTTTTACATTTATGTACTTACCATAAAAATCTCGTACTAACAACTCTATCTAGAAA
ATATTGATGGCCTTACATTTTATTGCTTTTGCATTTTTATTAAAAGAAAATTATATTTTG
TTAATTTTTTAACATTTTTATAAAGTCTTCATGTTAATAAAATTTATAAATGTGTATTAT
CAAAAAAAGTTAGTTAATCAATAATTTTAATTATGACACTTTGGAACAAAACTTTGATAG
GATTACGCTTTCAAGAAAACATGAAAGTTTTATGTGCTTTTTGAAAATTTATACTGTAGG
TAAAGAAAATATGCAGATAATGCATAAGCAATCATATCGATGATGCCTACAAATCCCGCA
GCAATATTTCTTCCAGTGACTCTTTCAGACCGTCCAAACCATGTGATTAACTGCACGATC
GAGGCAAGAAATAATAAAGTAGAGGCAATGAAAAAGTTTACAAATTCACTCAGTGACCAG
TTGATTGGCAAATTCAAGACATCTCGAATACCCAAGAAGTGTGCAACTGACCATAAAATT
GTACATATGAAAGTGAGGACGATTGCGAATAAAAAAAAGTGTGTGCCACTGAGAAACGCC
GGAGATGCGAGTATCATGCATATGATGGCGAGAATCTATGAGAAAAAAACTTCAATACAC
CATCAGTATGTTTAAAATAGTTAAAGTTAAATTGTATCCATCTTAAATCTGCAGCATCAT
AATTATTAGTACTGCCTGCACGATGTGATGATGATTGATTTAAACTGATGACAGTTTCTG
ACATTTTTATTATTTTATTAGTAATTCTCAATTGTCAATTCACAAATAATTGAATAATTT
ATTCTTTATTTATATTTGAACCGTCCTTATTTTAAAGTATAATATTAAAACAACAGCTGA
CAGTGGTAAACTTTAAAGACAACTGAAACTGGTTTAATGAAAACGAAAATGCGAAGTAAC
AA

>g7976.t31 Gene=g7976 Length=111
MMPTNPAAIFLPVTLSDRPNHVINCTIEARNNKVEAMKKFTNSLSDQLIGKFKTSRIPKK
CATDHKIVHMKVRTIANKKKCVPLRNAGDASIMHMMARIYEKKTSIHHQYV

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed