Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7976 g7976.t55 isoform g7976.t55 27433626 27434743
chr_2 g7976 g7976.t55 exon g7976.t55.exon1 27433626 27433909
chr_2 g7976 g7976.t55 cds g7976.t55.CDS1 27433783 27433909
chr_2 g7976 g7976.t55 exon g7976.t55.exon2 27433975 27434152
chr_2 g7976 g7976.t55 cds g7976.t55.CDS2 27433975 27434152
chr_2 g7976 g7976.t55 exon g7976.t55.exon3 27434431 27434743
chr_2 g7976 g7976.t55 cds g7976.t55.CDS3 27434431 27434461
chr_2 g7976 g7976.t55 TSS g7976.t55 NA NA
chr_2 g7976 g7976.t55 TTS g7976.t55 NA NA

Sequences

>g7976.t55 Gene=g7976 Length=775
AAAAAAGTTAGTTAATCAATAATTTTAATTATGACACTTTGGAACAAAACTTTGATAGGA
TTACGCTTTCAAGAAAACATGAAAGTTTTATGTGCTTTTTGAAAATTTATACTGTAGGTA
AAGAAAATATGCAGATAATGCATAAGCAATCATATCGATGATGCCTACAAATCCCGCAGC
AATATTTCTTCCAGTGACTCTTTCAGACCGTCCAAACCATGTGATTAACTGCACGATCGA
GGCAAGAAATAATAAAGTAGAGGCAATGAAAAAGTTTACAAATTCACTCAGTGACCAGTT
GATTGGCAAATTCAAGACATCTCGAATACCCAAGAAGTGTGCAACTGACCATAAAATTGT
ACATATGAAAGTGAGGACGATTGCGAATAAAAAAAAGTGTGTGCCACTGAGAAACGCCGG
AGATGCGAGTATCATGCATATGATGGCGAGAATCTATGAGAACTTCAATACACCATCAGT
ATGTTTAAAATAGTTAAAGTTAAATTGTATCCATCTTAAATCTGCAGCATCATAATTATT
AGTACTGCCTGCACGATGTGATGATGATTGATTTAAACTGATGACAGTTTCTGACATTTT
TATTATTTTATTAGTAATTCTCAATTGTCAATTCACAAATAATTGAATAATTTATTCTTT
ATTTATATTTGAACCGTCCTTATTTTAAAGTATAATATTAAAACAACAGCTGACAGTGGT
AAACTTTAAAGACAACTGAAACTGGTTTAATGAAAACGAAAATGCGAAGTAACAA

>g7976.t55 Gene=g7976 Length=111
MMPTNPAAIFLPVTLSDRPNHVINCTIEARNNKVEAMKKFTNSLSDQLIGKFKTSRIPKK
CATDHKIVHMKVRTIANKKKCVPLRNAGDASIMHMMARIYENFNTPSVCLK

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed