General information for g7977.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial.
Parent gene
- The parent gene g7977 is located on chr_2: 27439373..27441555 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7977 | g7977.t10 | isoform | g7977.t10 | 27436855 | 27438491 |
| chr_2 | g7977 | g7977.t10 | exon | g7977.t10.exon1 | 27436855 | 27437025 |
| chr_2 | g7977 | g7977.t10 | cds | g7977.t10.CDS1 | 27436962 | 27437025 |
| chr_2 | g7977 | g7977.t10 | exon | g7977.t10.exon2 | 27437719 | 27438491 |
| chr_2 | g7977 | g7977.t10 | cds | g7977.t10.CDS2 | 27437719 | 27438491 |
| chr_2 | g7977 | g7977.t10 | TSS | g7977.t10 | NA | NA |
| chr_2 | g7977 | g7977.t10 | TTS | g7977.t10 | NA | NA |
Sequences
>g7977.t10 Gene=g7977 Length=944
CTATTTTTTGACAAAAACAAAAAAAGTTATCTGATCACTGTGAGAGGGACATTTAGAAAT
ATACAGTTCATCAAAAGGGAGTGCGAGCAGCAGACTTGAATTTAATCATGAGAGGCATAC
GAAACTCAATTAGTCTTCACAAATTTGCAACTTCTCCAAAAAATCGAACAGCGTATTTGT
GTTTAGTGGCATCACAACAGCTTCACAATAATAATAATCAGATGTGCTTAGCATCAGGCA
CTAATAACAGCAATAGTCCCGCTACAAACCTTTCACATGTTCGATACTTTCATTTAACAC
ATATCTGTGATAAGTCGAATAAGGACCCAACAAATGGAAATGATAAAAACAATAATAATT
CGACAACATCAAGTGGTTCTAATAATAACAACAATAATAAAGACAATGGCAAAGACCCGA
ATAAAAAGAACACTCTTTCATGCCCAAAATGTGGCGATCCATGCACTCATGTTGAAACTT
TTGTAAATGCAACACGATTCGTCAAGTGTGAAAAATGTCATCATTTTTTTGTGGTGCTTA
GTGAGATGGACTCAAAAAAGACAGTCAAAGAAGAGTCTATTAAGGGAACAAAAAAACCAC
CGCCACCACCAAAAAAGATTATGGAATATTTGGACCGTCATGTAGTCGGTCAAGAACTCG
CCAAGAAGGTGCTATCAGTTGCAGTTTATAATCATTATAAACGCATTTACCATAATTTGC
CGCCACCATCAAATAACAATTCTACACAGTCAATTGATTCAATGGGAAGAGGCAGTGATT
TGTTGCATATTTCTGGCATAGGGCATACAATGCTTAGTTCAGCACCTACTGAAGTGCCAC
GTCCACCTTTATCGCCACCACAGCAACATCATCCTGGATCTGAATTATTAGAAGAAAAAA
ACCATACATTGAAATTAGAGAAAAGTAACATTTTAATGCTCGGA
>g7977.t10 Gene=g7977 Length=279
MRGIRNSISLHKFATSPKNRTAYLCLVASQQLHNNNNQMCLASGTNNSNSPATNLSHVRY
FHLTHICDKSNKDPTNGNDKNNNNSTTSSGSNNNNNNKDNGKDPNKKNTLSCPKCGDPCT
HVETFVNATRFVKCEKCHHFFVVLSEMDSKKTVKEESIKGTKKPPPPPKKIMEYLDRHVV
GQELAKKVLSVAVYNHYKRIYHNLPPPSNNNSTQSIDSMGRGSDLLHISGIGHTMLSSAP
TEVPRPPLSPPQQHHPGSELLEEKNHTLKLEKSNILMLG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7977.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 104 | - |
| 4 | g7977.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 99 | - |
| 5 | g7977.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 260 | - |
| 1 | g7977.t10 | PANTHER | PTHR48102:SF7 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL | 93 | 279 | 3.8E-31 |
| 2 | g7977.t10 | PANTHER | PTHR48102 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | 93 | 279 | 3.8E-31 |
| 6 | g7977.t10 | ProSiteProfiles | PS51902 | ClpX zinc binding (ZB) domain profile. | 100 | 153 | 14.75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008270 | zinc ion binding | MF |
| GO:0046983 | protein dimerization activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed