General information for g7977.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial.
Parent gene
- The parent gene g7977 is located on chr_2: 27439373..27441555 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7977 | g7977.t21 | isoform | g7977.t21 | 27439373 | 27439850 |
| chr_2 | g7977 | g7977.t21 | exon | g7977.t21.exon1 | 27439373 | 27439581 |
| chr_2 | g7977 | g7977.t21 | cds | g7977.t21.CDS1 | 27439414 | 27439581 |
| chr_2 | g7977 | g7977.t21 | exon | g7977.t21.exon2 | 27439659 | 27439850 |
| chr_2 | g7977 | g7977.t21 | cds | g7977.t21.CDS2 | 27439659 | 27439850 |
| chr_2 | g7977 | g7977.t21 | TSS | g7977.t21 | NA | NA |
| chr_2 | g7977 | g7977.t21 | TTS | g7977.t21 | NA | NA |
Sequences
>g7977.t21 Gene=g7977 Length=401
GTTTTCCAGTTTTAGTTCCATTTCATTCGTTAGACATTGACATGCTAGTAAGAATATTGA
CCGAACCCAAGAATGCACTTGTACAACAATATCGTGCACTTCTCGGAATGGATCAAGTGG
AACTCACATTCTCATCTGAAGCTTTAAAAGCTATCGCTAAATTGGCTATGGAACGTCAAA
CGGGAGCAAGAGGATTAAGAGCTATAATGGAATCTTTGCTACTCGATCCGATGTTTGAAG
TACCCGGATCTGAAATTAAAGCTGTACATATAACAGAAGAGTGCGTGATGGGAAGTCCTG
CAATTTATATTCACCGTTCGAGTGCAACATCATCAGATCCAAACGAGACTAATAGCAGCA
GTGAAGAGGAAGAAAATAGAAAATATCGCGTAAAACAATGA
>g7977.t21 Gene=g7977 Length=119
MLVRILTEPKNALVQQYRALLGMDQVELTFSSEALKAIAKLAMERQTGARGLRAIMESLL
LDPMFEVPGSEIKAVHITEECVMGSPAIYIHRSSATSSDPNETNSSSEEEENRKYRVKQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7977.t21 | Gene3D | G3DSA:1.10.8.60 | - | 1 | 97 | 4.2E-38 |
| 6 | g7977.t21 | MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 119 | - |
| 2 | g7977.t21 | PANTHER | PTHR48102:SF7 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL | 1 | 112 | 7.7E-34 |
| 3 | g7977.t21 | PANTHER | PTHR48102 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | 1 | 112 | 7.7E-34 |
| 1 | g7977.t21 | Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 2 | 68 | 2.8E-14 |
| 5 | g7977.t21 | SMART | SM01086 | ClpB_D2_small_2 | 1 | 90 | 3.0E-24 |
| 4 | g7977.t21 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 82 | 7.44E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
