General information for g7981.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7981 is located on chr_2: 27461660..27463044 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7981 | g7981.t1 | isoform | g7981.t1 | 27460137 | 27461660 |
| chr_2 | g7981 | g7981.t1 | exon | g7981.t1.exon1 | 27460137 | 27461660 |
| chr_2 | g7981 | g7981.t1 | cds | g7981.t1.CDS1 | 27460137 | 27461660 |
| chr_2 | g7981 | g7981.t1 | TSS | g7981.t1 | NA | NA |
| chr_2 | g7981 | g7981.t1 | TTS | g7981.t1 | NA | NA |
Sequences
>g7981.t1 Gene=g7981 Length=1524
ATGCAACAGTATCCACATTTGCAAAAGAATCTTCAAATGTCAAATACAATGCTTGAGCAG
AATACTTCCAATCCCATGAATCAGAGTAAATCAAATATAACATCTTCAATGAGTTATAAT
GACATAAAATCACAACAGCAACATCTTTCTCATTCTCAAACACAACAGCAGACGTCAACC
AATTTGTCACAAAATGACTTCTGGTTTAATGAAAAACTTAGTGAAGTTCCACAAAAGTCA
TCTACACCACCGAGACAAGCCAAATCATTGTTTTCACCTAGTCCAGAGCAGGACTCGAGT
GAAAAGACTAAATATATGATGATGACGGGCAGTCTTAAACGTGAAAGTAATACTGTAGAC
AGTCCCAAAGAAGATCGTAAATCATCAACACCTTCAAAACGTGAGAAAACATTGCATGGA
AGTCATAAAATCAATTCAAATCTCCCGCCACCGCCCTCATTACAATCTTCCTCTTCATCA
TCGATGCAAAAAGACAAAAACTATCTCAAACTTGACAGTACATCGACTATTAATCCTGAT
GCGCATCTTTTAAATTCATCTTCATCAAGCACTAATGCAATTCTTGATCCATCAACTAAA
AAGAGATCTTATTCATCTATTAAAGACTCATCAGACTCTAACAACCATAATCGTGATGTG
AAAGTTCGAAAGATTGATAGTGTAAAATCAGAACCGGCATCACCACAAACTACAAATTTA
AGAACCCAACAGCAACAGAGTCAGCAACAGCAAATCTCACAATTTACTTCTCTTGATCAA
TCTTCCTCTACTTCGTTAAAACAACAACCTATTGAGACTAATCCTGACATTGTGAAATCT
TTGTTGAAAGAGTGTTTTGCGACTAATAACAAATTTGATGCATATGATACAGACAGTCCG
TTAGATGTAATCAATCCAGAATTGCCGGATGAACTTTTGGAACCAACAGCAGCAAATCAA
ACTGCTCAACAAGTAAAACGTGAACCTATTCTTGATAGTCAAATGGAGAGTGGAAAACGT
TCGGATGATCGAATGGATTCTTCTGCTGGCGAAAGCCGTAAAGATCATAAGAAAAAATCA
AAGAAAAAGAAGGAGAAACATAAGCATAAGAAAAAACATAAATCCTCAGATCGTGAGGAT
CGCGGTGATTCTTCTTTAAAACTAACATTTGCAAAAGAAAAACGTGATTCAAAAAGTTCA
CCAGAGAGTAATCATGCTTCATTTAACACTATTGGTGGTGGATTAAAAATCAAAATTCCA
ATGAAAGATGTTGGTAAGGTTCCTGAACCTAGTAATCAGCAACCAGCACCAATTAAGTTA
AAAATTTCAAAAGAGAAATTTAGTAGTTTTGCAAATTTAAATAATAATAACAACAATAGT
ACGTCAGCAATGTCTCAATCTTCCTCATCGTCCTCCTCGACACATAAAAAAAAGGACAAA
GATCGTGACAAAACTAAATCATCGAAAAGCTCTAAGCATAATTCGTCATCTGATTTCAAA
GAAAGTGTAAGTGCTGACAGGTAA
>g7981.t1 Gene=g7981 Length=507
MQQYPHLQKNLQMSNTMLEQNTSNPMNQSKSNITSSMSYNDIKSQQQHLSHSQTQQQTST
NLSQNDFWFNEKLSEVPQKSSTPPRQAKSLFSPSPEQDSSEKTKYMMMTGSLKRESNTVD
SPKEDRKSSTPSKREKTLHGSHKINSNLPPPPSLQSSSSSSMQKDKNYLKLDSTSTINPD
AHLLNSSSSSTNAILDPSTKKRSYSSIKDSSDSNNHNRDVKVRKIDSVKSEPASPQTTNL
RTQQQQSQQQQISQFTSLDQSSSTSLKQQPIETNPDIVKSLLKECFATNNKFDAYDTDSP
LDVINPELPDELLEPTAANQTAQQVKREPILDSQMESGKRSDDRMDSSAGESRKDHKKKS
KKKKEKHKHKKKHKSSDREDRGDSSLKLTFAKEKRDSKSSPESNHASFNTIGGGLKIKIP
MKDVGKVPEPSNQQPAPIKLKISKEKFSSFANLNNNNNNSTSAMSQSSSSSSSTHKKKDK
DRDKTKSSKSSKHNSSSDFKESVSADR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 116 | - |
| 11 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 273 | - |
| 3 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 141 | - |
| 5 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 201 | - |
| 1 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 228 | - |
| 9 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 273 | - |
| 12 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 507 | - |
| 13 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 330 | - |
| 7 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 354 | - |
| 2 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 375 | - |
| 10 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 401 | - |
| 6 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 472 | - |
| 4 | g7981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 507 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
