General information for g7986.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NAD kinase.
Parent gene
- The parent gene g7986 is located on chr_2: 27480927..27481830 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7986 | g7986.t1 | TTS | g7986.t1 | 27475837 | 27475837 |
| chr_2 | g7986 | g7986.t1 | isoform | g7986.t1 | 27476061 | 27480970 |
| chr_2 | g7986 | g7986.t1 | exon | g7986.t1.exon1 | 27476061 | 27476256 |
| chr_2 | g7986 | g7986.t1 | cds | g7986.t1.CDS1 | 27476061 | 27476256 |
| chr_2 | g7986 | g7986.t1 | exon | g7986.t1.exon2 | 27476321 | 27476537 |
| chr_2 | g7986 | g7986.t1 | cds | g7986.t1.CDS2 | 27476321 | 27476537 |
| chr_2 | g7986 | g7986.t1 | exon | g7986.t1.exon3 | 27476598 | 27476709 |
| chr_2 | g7986 | g7986.t1 | cds | g7986.t1.CDS3 | 27476598 | 27476709 |
| chr_2 | g7986 | g7986.t1 | exon | g7986.t1.exon4 | 27476831 | 27477212 |
| chr_2 | g7986 | g7986.t1 | cds | g7986.t1.CDS4 | 27476831 | 27477212 |
| chr_2 | g7986 | g7986.t1 | exon | g7986.t1.exon5 | 27477270 | 27477493 |
| chr_2 | g7986 | g7986.t1 | cds | g7986.t1.CDS5 | 27477270 | 27477493 |
| chr_2 | g7986 | g7986.t1 | exon | g7986.t1.exon6 | 27477560 | 27477653 |
| chr_2 | g7986 | g7986.t1 | cds | g7986.t1.CDS6 | 27477560 | 27477653 |
| chr_2 | g7986 | g7986.t1 | exon | g7986.t1.exon7 | 27480933 | 27480970 |
| chr_2 | g7986 | g7986.t1 | cds | g7986.t1.CDS7 | 27480933 | 27480970 |
| chr_2 | g7986 | g7986.t1 | TSS | g7986.t1 | 27481228 | 27481228 |
Sequences
>g7986.t1 Gene=g7986 Length=1263
ATGAATGGCAAAAAAAATAATGGAACCGAAACGGACTGGCGAACGCGAAGCTTAAATGCG
CCCAGCCCAGTGCAGCAATTTGGTCCATGCGGACGAATTATGAAAAACTCTGCAATGGTC
ATGCAAATTCAAGACCCTGCTTCGCAACGCTTAACATGGTACAAACCACCACTAGCTGTG
TTAGTTGTTAAGAAAGTTCGAGATTCAACTGTTCTATCGCCATTTGTACAATTAGTTGAA
TGGTTGATACAAGAAAAACATATGGTTGTGTGGGTTGAATCAGCTGTTCTCGAAGATCCA
TTATTAATGCAAGATAAAAAGTTTCTCAATATTAAAGATAAATTAGTAACATTCAAGGAC
GGAAGAGACGATCTTACAGACCGAATTGATTTCATAATTTGCCTTGGAGGAGACGGAACA
TTGCTGTATGCATCGTTATTGTTTCAACAATCTGTACCTCCGGTGATGGCTTTTCATTTG
GGCTCGTTGGGCTTCTTGACACCATTCCAATTTCAAAACTTTCAAGAGCAAGTGACAAAT
GTCCTCGAGGGACACGCTGCTTTAACATTACGTAGCAGACTTCGTTGCATCATCGTGCGT
AAAAGTATCAAAGATCATAAGAGTGATTCAGATCGAAATGACAGCAGCTCAGCTGAGTAT
GACTGTAGTGGTTCAAATAGTATTAGTAGTAGCAATTGCAATACATTGCCTTCAACAAAT
ATTCTCGTGCTCAATGAGGTCGTTATCGATCGTGGCCCATCTCCATATTTAAGTAATATT
GATTTGTTTTTGGATGGACGACACATTACTTCAGTTCAGGGCGATGGCCTTATAATATCT
TCACCAAGTGGAAGTACGGCTTATGCACTGGCAGCAGGTGCTTCTATGATTCATCCGTCA
GTTCCCGCAATAATGGTTACACCAATTTGTCCACATTCATTAAGTTTTCGGCCAATAGTC
GTTCCAGCTGGTGTTGAACTTAAAATTTCTGTATCTCCTGATAGTCGCAATACATCTTGG
GTTTCATTTGATGGGCGAAATCGTCAAGAATTATTACATGGTGATAGTTTACGTGTTACA
ACTTCGATATATCCTGTTCCTAGTATTTGCTCTCAGGATCAAATCTCAGATTGGTTCGAC
TCATTAGCAGAATGTTTGCATTGGAATGTTCGAAAGCGCCAAAAATGTTTAGATGAGCTG
AGCGATTTGACAGGAAGTGGTAGTGAAGATACTCTAGACGAAATAGACAATGTTCAAATT
TGA
>g7986.t1 Gene=g7986 Length=420
MNGKKNNGTETDWRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYKPPLAV
LVVKKVRDSTVLSPFVQLVEWLIQEKHMVVWVESAVLEDPLLMQDKKFLNIKDKLVTFKD
GRDDLTDRIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFQFQNFQEQVTN
VLEGHAALTLRSRLRCIIVRKSIKDHKSDSDRNDSSSAEYDCSGSNSISSSNCNTLPSTN
ILVLNEVVIDRGPSPYLSNIDLFLDGRHITSVQGDGLIISSPSGSTAYALAAGASMIHPS
VPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTSWVSFDGRNRQELLHGDSLRVT
TSIYPVPSICSQDQISDWFDSLAECLHWNVRKRQKCLDELSDLTGSGSEDTLDEIDNVQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7986.t1 | Gene3D | G3DSA:3.40.50.10330 | - | 87 | 386 | 0.00000 |
| 7 | g7986.t1 | Gene3D | G3DSA:2.60.200.30 | - | 193 | 363 | 0.00000 |
| 4 | g7986.t1 | Hamap | MF_00361 | NAD kinase [nadK]. | 58 | 388 | 25.20138 |
| 2 | g7986.t1 | PANTHER | PTHR20275:SF29 | NAD KINASE B | 14 | 405 | 0.00000 |
| 3 | g7986.t1 | PANTHER | PTHR20275 | NAD KINASE | 14 | 405 | 0.00000 |
| 1 | g7986.t1 | Pfam | PF01513 | ATP-NAD kinase | 66 | 369 | 0.00000 |
| 5 | g7986.t1 | SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 60 | 394 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003951 | NAD+ kinase activity | MF |
| GO:0006741 | NADP biosynthetic process | BP |
| GO:0019674 | NAD metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00858 (NAD+ kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
