General information for g7986.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NAD kinase.
Parent gene
- The parent gene g7986 is located on chr_2: 27480927..27481830 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7986 | g7986.t11 | TTS | g7986.t11 | 27475837 | 27475837 |
| chr_2 | g7986 | g7986.t11 | isoform | g7986.t11 | 27476061 | 27477274 |
| chr_2 | g7986 | g7986.t11 | exon | g7986.t11.exon1 | 27476061 | 27476256 |
| chr_2 | g7986 | g7986.t11 | cds | g7986.t11.CDS1 | 27476061 | 27476256 |
| chr_2 | g7986 | g7986.t11 | exon | g7986.t11.exon2 | 27476321 | 27476537 |
| chr_2 | g7986 | g7986.t11 | cds | g7986.t11.CDS2 | 27476321 | 27476537 |
| chr_2 | g7986 | g7986.t11 | exon | g7986.t11.exon3 | 27476598 | 27476709 |
| chr_2 | g7986 | g7986.t11 | cds | g7986.t11.CDS3 | 27476598 | 27476709 |
| chr_2 | g7986 | g7986.t11 | exon | g7986.t11.exon4 | 27476831 | 27477212 |
| chr_2 | g7986 | g7986.t11 | cds | g7986.t11.CDS4 | 27476831 | 27477103 |
| chr_2 | g7986 | g7986.t11 | exon | g7986.t11.exon5 | 27477270 | 27477274 |
| chr_2 | g7986 | g7986.t11 | TSS | g7986.t11 | 27477907 | 27477907 |
Sequences
>g7986.t11 Gene=g7986 Length=912
TTCAAGGACGGAAGAGACGATCTTACAGACCGAATTGATTTCATAATTTGCCTTGGAGGA
GACGGAACATTGCTGTATGCATCGTTATTGTTTCAACAATCTGTACCTCCGGTGATGGCT
TTTCATTTGGGCTCGTTGGGCTTCTTGACACCATTCCAATTTCAAAACTTTCAAGAGCAA
GTGACAAATGTCCTCGAGGGACACGCTGCTTTAACATTACGTAGCAGACTTCGTTGCATC
ATCGTGCGTAAAAGTATCAAAGATCATAAGAGTGATTCAGATCGAAATGACAGCAGCTCA
GCTGAGTATGACTGTAGTGGTTCAAATAGTATTAGTAGTAGCAATTGCAATACATTGCCT
TCAACAAATATTCTCGTGCTCAATGAGGTCGTTATCGATCGTGGCCCATCTCCATATTTA
AGTAATATTGATTTGTTTTTGGATGGACGACACATTACTTCAGTTCAGGGCGATGGCCTT
ATAATATCTTCACCAAGTGGAAGTACGGCTTATGCACTGGCAGCAGGTGCTTCTATGATT
CATCCGTCAGTTCCCGCAATAATGGTTACACCAATTTGTCCACATTCATTAAGTTTTCGG
CCAATAGTCGTTCCAGCTGGTGTTGAACTTAAAATTTCTGTATCTCCTGATAGTCGCAAT
ACATCTTGGGTTTCATTTGATGGGCGAAATCGTCAAGAATTATTACATGGTGATAGTTTA
CGTGTTACAACTTCGATATATCCTGTTCCTAGTATTTGCTCTCAGGATCAAATCTCAGAT
TGGTTCGACTCATTAGCAGAATGTTTGCATTGGAATGTTCGAAAGCGCCAAAAATGTTTA
GATGAGCTGAGCGATTTGACAGGAAGTGGTAGTGAAGATACTCTAGACGAAATAGACAAT
GTTCAAATTTGA
>g7986.t11 Gene=g7986 Length=265
MAFHLGSLGFLTPFQFQNFQEQVTNVLEGHAALTLRSRLRCIIVRKSIKDHKSDSDRNDS
SSAEYDCSGSNSISSSNCNTLPSTNILVLNEVVIDRGPSPYLSNIDLFLDGRHITSVQGD
GLIISSPSGSTAYALAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDS
RNTSWVSFDGRNRQELLHGDSLRVTTSIYPVPSICSQDQISDWFDSLAECLHWNVRKRQK
CLDELSDLTGSGSEDTLDEIDNVQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7986.t11 | Gene3D | G3DSA:3.40.50.10330 | - | 2 | 232 | 0 |
| 6 | g7986.t11 | Gene3D | G3DSA:2.60.200.30 | - | 38 | 208 | 0 |
| 2 | g7986.t11 | PANTHER | PTHR20275:SF30 | - | 1 | 242 | 0 |
| 3 | g7986.t11 | PANTHER | PTHR20275 | NAD KINASE | 1 | 242 | 0 |
| 1 | g7986.t11 | Pfam | PF01513 | ATP-NAD kinase | 2 | 214 | 0 |
| 4 | g7986.t11 | SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 1 | 239 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003951 | NAD+ kinase activity | MF |
| GO:0006741 | NADP biosynthetic process | BP |
| GO:0019674 | NAD metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
