General information for g7986.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NAD kinase.
Parent gene
- The parent gene g7986 is located on chr_2: 27480927..27481830 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7986 | g7986.t12 | TTS | g7986.t12 | 27475837 | 27475837 |
| chr_2 | g7986 | g7986.t12 | isoform | g7986.t12 | 27476061 | 27477658 |
| chr_2 | g7986 | g7986.t12 | exon | g7986.t12.exon1 | 27476061 | 27476256 |
| chr_2 | g7986 | g7986.t12 | cds | g7986.t12.CDS1 | 27476061 | 27476256 |
| chr_2 | g7986 | g7986.t12 | exon | g7986.t12.exon2 | 27476321 | 27476537 |
| chr_2 | g7986 | g7986.t12 | cds | g7986.t12.CDS2 | 27476321 | 27476537 |
| chr_2 | g7986 | g7986.t12 | exon | g7986.t12.exon3 | 27476598 | 27476709 |
| chr_2 | g7986 | g7986.t12 | cds | g7986.t12.CDS3 | 27476598 | 27476709 |
| chr_2 | g7986 | g7986.t12 | exon | g7986.t12.exon4 | 27476831 | 27477212 |
| chr_2 | g7986 | g7986.t12 | cds | g7986.t12.CDS4 | 27476831 | 27477212 |
| chr_2 | g7986 | g7986.t12 | exon | g7986.t12.exon5 | 27477270 | 27477493 |
| chr_2 | g7986 | g7986.t12 | cds | g7986.t12.CDS5 | 27477270 | 27477493 |
| chr_2 | g7986 | g7986.t12 | exon | g7986.t12.exon6 | 27477560 | 27477658 |
| chr_2 | g7986 | g7986.t12 | cds | g7986.t12.CDS6 | 27477560 | 27477592 |
| chr_2 | g7986 | g7986.t12 | TSS | g7986.t12 | 27477907 | 27477907 |
Sequences
>g7986.t12 Gene=g7986 Length=1230
TTAAGGCGAACGCGAAGCTTAAATGCGCCCAGCCCAGTGCAGCAATTTGGTCCATGCGGA
CGAATTATGAAAAACTCTGCAATGGTCATGCAAATTCAAGACCCTGCTTCGCAACGCTTA
ACATGGTACAAACCACCACTAGCTGTGTTAGTTGTTAAGAAAGTTCGAGATTCAACTGTT
CTATCGCCATTTGTACAATTAGTTGAATGGTTGATACAAGAAAAACATATGGTTGTGTGG
GTTGAATCAGCTGTTCTCGAAGATCCATTATTAATGCAAGATAAAAAGTTTCTCAATATT
AAAGATAAATTAGTAACATTCAAGGACGGAAGAGACGATCTTACAGACCGAATTGATTTC
ATAATTTGCCTTGGAGGAGACGGAACATTGCTGTATGCATCGTTATTGTTTCAACAATCT
GTACCTCCGGTGATGGCTTTTCATTTGGGCTCGTTGGGCTTCTTGACACCATTCCAATTT
CAAAACTTTCAAGAGCAAGTGACAAATGTCCTCGAGGGACACGCTGCTTTAACATTACGT
AGCAGACTTCGTTGCATCATCGTGCGTAAAAGTATCAAAGATCATAAGAGTGATTCAGAT
CGAAATGACAGCAGCTCAGCTGAGTATGACTGTAGTGGTTCAAATAGTATTAGTAGTAGC
AATTGCAATACATTGCCTTCAACAAATATTCTCGTGCTCAATGAGGTCGTTATCGATCGT
GGCCCATCTCCATATTTAAGTAATATTGATTTGTTTTTGGATGGACGACACATTACTTCA
GTTCAGGGCGATGGCCTTATAATATCTTCACCAAGTGGAAGTACGGCTTATGCACTGGCA
GCAGGTGCTTCTATGATTCATCCGTCAGTTCCCGCAATAATGGTTACACCAATTTGTCCA
CATTCATTAAGTTTTCGGCCAATAGTCGTTCCAGCTGGTGTTGAACTTAAAATTTCTGTA
TCTCCTGATAGTCGCAATACATCTTGGGTTTCATTTGATGGGCGAAATCGTCAAGAATTA
TTACATGGTGATAGTTTACGTGTTACAACTTCGATATATCCTGTTCCTAGTATTTGCTCT
CAGGATCAAATCTCAGATTGGTTCGACTCATTAGCAGAATGTTTGCATTGGAATGTTCGA
AAGCGCCAAAAATGTTTAGATGAGCTGAGCGATTTGACAGGAAGTGGTAGTGAAGATACT
CTAGACGAAATAGACAATGTTCAAATTTGA
>g7986.t12 Gene=g7986 Length=387
MKNSAMVMQIQDPASQRLTWYKPPLAVLVVKKVRDSTVLSPFVQLVEWLIQEKHMVVWVE
SAVLEDPLLMQDKKFLNIKDKLVTFKDGRDDLTDRIDFIICLGGDGTLLYASLLFQQSVP
PVMAFHLGSLGFLTPFQFQNFQEQVTNVLEGHAALTLRSRLRCIIVRKSIKDHKSDSDRN
DSSSAEYDCSGSNSISSSNCNTLPSTNILVLNEVVIDRGPSPYLSNIDLFLDGRHITSVQ
GDGLIISSPSGSTAYALAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSP
DSRNTSWVSFDGRNRQELLHGDSLRVTTSIYPVPSICSQDQISDWFDSLAECLHWNVRKR
QKCLDELSDLTGSGSEDTLDEIDNVQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7986.t12 | Gene3D | G3DSA:3.40.50.10330 | - | 54 | 353 | 0.00000 |
| 7 | g7986.t12 | Gene3D | G3DSA:2.60.200.30 | - | 160 | 330 | 0.00000 |
| 4 | g7986.t12 | Hamap | MF_00361 | NAD kinase [nadK]. | 25 | 355 | 25.20138 |
| 2 | g7986.t12 | PANTHER | PTHR20275:SF29 | NAD KINASE B | 2 | 372 | 0.00000 |
| 3 | g7986.t12 | PANTHER | PTHR20275 | NAD KINASE | 2 | 372 | 0.00000 |
| 1 | g7986.t12 | Pfam | PF01513 | ATP-NAD kinase | 32 | 336 | 0.00000 |
| 5 | g7986.t12 | SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 27 | 361 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003951 | NAD+ kinase activity | MF |
| GO:0006741 | NADP biosynthetic process | BP |
| GO:0019674 | NAD metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00858 (NAD+ kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
