General information for g7986.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative NAD kinase.
Parent gene
- The parent gene g7986 is located on chr_2: 27480927..27481830 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7986 | g7986.t14 | TTS | g7986.t14 | 27475837 | 27475837 |
| chr_2 | g7986 | g7986.t14 | isoform | g7986.t14 | 27476860 | 27480970 |
| chr_2 | g7986 | g7986.t14 | exon | g7986.t14.exon1 | 27476860 | 27477493 |
| chr_2 | g7986 | g7986.t14 | cds | g7986.t14.CDS1 | 27477266 | 27477493 |
| chr_2 | g7986 | g7986.t14 | exon | g7986.t14.exon2 | 27477560 | 27477653 |
| chr_2 | g7986 | g7986.t14 | cds | g7986.t14.CDS2 | 27477560 | 27477653 |
| chr_2 | g7986 | g7986.t14 | exon | g7986.t14.exon3 | 27480933 | 27480970 |
| chr_2 | g7986 | g7986.t14 | cds | g7986.t14.CDS3 | 27480933 | 27480970 |
| chr_2 | g7986 | g7986.t14 | TSS | g7986.t14 | 27481228 | 27481228 |
Sequences
>g7986.t14 Gene=g7986 Length=766
ATGAATGGCAAAAAAAATAATGGAACCGAAACGGACTGGCGAACGCGAAGCTTAAATGCG
CCCAGCCCAGTGCAGCAATTTGGTCCATGCGGACGAATTATGAAAAACTCTGCAATGGTC
ATGCAAATTCAAGACCCTGCTTCGCAACGCTTAACATGGTACAAACCACCACTAGCTGTG
TTAGTTGTTAAGAAAGTTCGAGATTCAACTGTTCTATCGCCATTTGTACAATTAGTTGAA
TGGTTGATACAAGAAAAACATATGGTTGTGTGGGTTGAATCAGCTGTTCTCGAAGATCCA
TTATTAATGCAAGATAAAAAGTTTCTCAATATTAAAGATAAATTAGTAACATTCAAGTAA
GTATTTATTGTTCGATATGCTAATGAATAAATTACAAACTCTATATCCCACAGGGACGGA
AGAGACGATCTTACAGACCGAATTGATTTCATAATTTGCCTTGGAGGAGACGGAACATTG
CTGTATGCATCGTTATTGTTTCAACAATCTGTACCTCCGGTGATGGCTTTTCATTTGGGC
TCGTTGGGCTTCTTGACACCATTCCAATTTCAAAACTTTCAAGAGCAAGTGACAAATGTC
CTCGAGGGACACGCTGCTTTAACATTACGTAGCAGACTTCGTTGCATCATCGTGCGTAAA
AGTATCAAAGATCATAAGAGTGATTCAGATCGAAATGACAGCAGCTCAGCTGAGTATGAC
TGTAGTGGTTCAAATAGTATTAGTAGTAGCAATTGCAATACATTGC
>g7986.t14 Gene=g7986 Length=119
MNGKKNNGTETDWRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYKPPLAV
LVVKKVRDSTVLSPFVQLVEWLIQEKHMVVWVESAVLEDPLLMQDKKFLNIKDKLVTFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7986.t14 | Gene3D | G3DSA:3.40.50.12540 | - | 20 | 118 | 0 |
| 1 | g7986.t14 | PANTHER | PTHR20275:SF29 | NAD KINASE B | 13 | 119 | 0 |
| 2 | g7986.t14 | PANTHER | PTHR20275 | NAD KINASE | 13 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
