Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8020 g8020.t5 TTS g8020.t5 27931138 27931138
chr_2 g8020 g8020.t5 isoform g8020.t5 27931225 27932100
chr_2 g8020 g8020.t5 exon g8020.t5.exon1 27931225 27931392
chr_2 g8020 g8020.t5 cds g8020.t5.CDS1 27931225 27931392
chr_2 g8020 g8020.t5 exon g8020.t5.exon2 27931455 27931752
chr_2 g8020 g8020.t5 cds g8020.t5.CDS2 27931455 27931643
chr_2 g8020 g8020.t5 exon g8020.t5.exon3 27931840 27932100
chr_2 g8020 g8020.t5 TSS g8020.t5 27932107 27932107

Sequences

>g8020.t5 Gene=g8020 Length=727
ATGGAGAAGTGGCGAGGAAAAGTTGCAATTGTCACCGGAGCTTCTTCCGGCATAGGTGCT
GCAATTGTTAGAGATTTAGCAAAGAATGGAATCACAGTGATTGGACTAGCACGACGAGTT
CAGAAAATTAGAGAACAAACTAAAGATTTCCCTGAAAATTATGCAAACGTTCATGCATTT
TATTGTGATGTGTCGAAAATTGAAAGCATAAAAGAAGCATTTAAATTGATTGAGGAGAGA
TTTGGAGTAATTAATATTCTGAAAAACTTCAATTTTAGTCGACGATGAAGAAACAGATGG
AAAAATTTCCCAAGTGATTGACACAAATTTCACTGGATTGGTGCATGTCACACGTCATGC
TTATATGCTAATGAAAAAATCTGAAGATTACGGTATGGTTGTCAACATAAATTCTGTCGC
AGGTCACAAAGTTTCATTTCCATATTATGGTGTGCCTGAAACAAATGTCTACAATGGATC
TAAATTTGCTGTTACTGCAACTACTGAATATTTGAGGCACGAATTGATTCAAATGAAAGA
TAAGAAAGTTCGAGTTTCATCGGTTAGTCCTGGAGTTGTTGATACTTCTTTCTTCCATTC
ATCGCAAATGCTTCCTGATAATATTGAAATGAGAGATGTAGCACCAGTATTAAATCCATC
TGACATAGCAGATGCAGTAATGTATTTACTTCAAGTTCCATATCATGTGAATATTACAGA
AATGACA

>g8020.t5 Gene=g8020 Length=119
MKKSEDYGMVVNINSVAGHKVSFPYYGVPETNVYNGSKFAVTATTEYLRHELIQMKDKKV
RVSSVSPGVVDTSFFHSSQMLPDNIEMRDVAPVLNPSDIADAVMYLLQVPYHVNITEMT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g8020.t5 Gene3D G3DSA:3.40.50.720 - 1 119 0
2 g8020.t5 PANTHER PTHR43115 DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 1 118 0
3 g8020.t5 PANTHER PTHR43115:SF4 DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 1 118 0
6 g8020.t5 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 18 0
7 g8020.t5 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 34 53 0
4 g8020.t5 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 58 75 0
5 g8020.t5 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 109 0
1 g8020.t5 Pfam PF00106 short chain dehydrogenase 4 77 0
8 g8020.t5 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1 117 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

## [1] "No matching GO terms"

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed