General information for g8026.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Congested-like trachea protein.
Parent gene
- The parent gene g8026 is located on chr_2: 27962485..27962811 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8026 | g8026.t1 | isoform | g8026.t1 | 27962179 | 27962703 |
| chr_2 | g8026 | g8026.t1 | exon | g8026.t1.exon1 | 27962179 | 27962299 |
| chr_2 | g8026 | g8026.t1 | cds | g8026.t1.CDS1 | 27962179 | 27962299 |
| chr_2 | g8026 | g8026.t1 | exon | g8026.t1.exon2 | 27962379 | 27962403 |
| chr_2 | g8026 | g8026.t1 | cds | g8026.t1.CDS2 | 27962379 | 27962403 |
| chr_2 | g8026 | g8026.t1 | exon | g8026.t1.exon3 | 27962472 | 27962703 |
| chr_2 | g8026 | g8026.t1 | cds | g8026.t1.CDS3 | 27962472 | 27962703 |
| chr_2 | g8026 | g8026.t1 | TTS | g8026.t1 | 27962962 | 27962962 |
| chr_2 | g8026 | g8026.t1 | TSS | g8026.t1 | NA | NA |
Sequences
>g8026.t1 Gene=g8026 Length=378
ATGCCAGCATCGGGACTTTATTTCTTAACGTACGAGCTTATTAAAAAGAAAGTAGCTGAA
AGTGTAAAAGAAGGTGAAAAATTGACACCGACAAGAGAGTTTTTGGGAACAATTTTTGCA
GGTGGTATGGCTGGAGTTGCAAATTGGACGGTAGGAATGCCTCAAGATGTGTTGAAGAGT
CGTTTACAGACAGCTCCTGAAGGAAAATATACAGGAATGGGAGATGTATTTAGACAACTT
ATGAAAAATGAGGGTCCATTTGCTCTCTATAAAGGATTTGTACCTGTTATGACGAGAGCT
ATTCCAGCAAATGCTGCTTGTTTTATTGGTCTTGAATTATGTATGCGAGTACTCAATCAA
ATTGCTCCGAATTTGTAA
>g8026.t1 Gene=g8026 Length=125
MPASGLYFLTYELIKKKVAESVKEGEKLTPTREFLGTIFAGGMAGVANWTVGMPQDVLKS
RLQTAPEGKYTGMGDVFRQLMKNEGPFALYKGFVPVMTRAIPANAACFIGLELCMRVLNQ
IAPNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8026.t1 | Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 1 | 123 | 0.000 |
| 2 | g8026.t1 | PANTHER | PTHR45624:SF4 | MITOCHONDRIAL CARNITINE/ACYLCARNITINE CARRIER PROTEIN | 1 | 120 | 0.000 |
| 3 | g8026.t1 | PANTHER | PTHR45624 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 1 | 120 | 0.000 |
| 1 | g8026.t1 | Pfam | PF00153 | Mitochondrial carrier protein | 33 | 120 | 0.000 |
| 6 | g8026.t1 | ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 32 | 117 | 22.685 |
| 4 | g8026.t1 | SUPERFAMILY | SSF103506 | Mitochondrial carrier | 2 | 113 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
