General information for g803.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 2A3.
Parent gene
- The parent gene g803 is located on chr_3: 6102476..6103584 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g803 | g803.t10 | TSS | g803.t10 | 6097493 | 6097493 |
| chr_3 | g803 | g803.t10 | isoform | g803.t10 | 6097572 | 6099234 |
| chr_3 | g803 | g803.t10 | exon | g803.t10.exon1 | 6097572 | 6097988 |
| chr_3 | g803 | g803.t10 | cds | g803.t10.CDS1 | 6097572 | 6097988 |
| chr_3 | g803 | g803.t10 | exon | g803.t10.exon2 | 6098112 | 6098185 |
| chr_3 | g803 | g803.t10 | cds | g803.t10.CDS2 | 6098112 | 6098185 |
| chr_3 | g803 | g803.t10 | exon | g803.t10.exon3 | 6098246 | 6098857 |
| chr_3 | g803 | g803.t10 | cds | g803.t10.CDS3 | 6098246 | 6098857 |
| chr_3 | g803 | g803.t10 | exon | g803.t10.exon4 | 6098911 | 6099234 |
| chr_3 | g803 | g803.t10 | cds | g803.t10.CDS4 | 6098911 | 6099190 |
| chr_3 | g803 | g803.t10 | TTS | g803.t10 | 6099403 | 6099403 |
Sequences
>g803.t10 Gene=g803 Length=1427
ATGCCAGTATTTATTGAAAGTGCTAAAATATTGATAGTGTTCTCAACAATTAGTAAATCC
CATGTGATGCCTTTAGAAGTAGTGGCAAAATTATTAGCCGAAAGAAATCATGAAGTAACT
TTTTTCACTCCATTTCCAAGTGGCAAGGCAATTAAGAACTTAAGAGAGGTTCAAATTCCA
TTCGACGAAAAAGATAAAGAGTTTTTGAATCAAATAGCAAAAAATCCAGAGGATTCAAGT
ATGTTTACAATGATGAAAGAAATGCCGAAGCTTATTACTAAAACTGGAAATACAACTTTA
CAATTGCCTGAAATGAGAAGAATAATGAAGGAAGAAAAGTTTGACCTTTTAATTAATGGT
TACTTCATGACAGAATTTATTCTTGGCCTTGGCGATCATTTTAAAGTGCCAACTATTAAC
TTCTTTATGAACATTATCGATGTATTGGTAATGAGACAAATTGCCAATTACATTGGCAAA
GAAGTTTACAACTATAATTTTCCTCCTGATCAGTATCGTTCATATGAAGAGTCATTAAGA
AACGTTTCTCTCGTACTTCTCAACACGCATTTTAGTTCTGCAAGACCTCGTCCTTATTTA
CCAAATATGATTGAAGTTGGTGGCCTTCAAGTGAAACCAAATCCAAGTCCTTTGCCTAAT
GATCTCAAAACATTCCTTGATGAAGCTGAAGATGGTGCAATTTTATTTAGTTTAGGTTCA
AATGCAAAAAGCACTTTTCTGCCAGAGAATACGATCAAAACTTTACTCAAAGCTTTTTCA
CAGATAAAACAGAGAGTTGTAATGAAATGGGAATCAGATACACTTAAAGGAAAACCTGAA
AATGTTTTCATTAGCAAATGGTTACCACAAGATGATGTTTTAGCACATAAAAATATAAAA
TTGTTCATTTCACATTGTGGCTTTGGTGGACTTATTGAAGCTAAATATCATGGCGTTCCT
ATTCTTGGTATTCCATTATTTGCTGACCAACCAGCTAATGCTGACATGATTGAAAAAGAA
GGATGGGGTAAACAAATTTCAATAAATACAATCACAGCTGATGAGCTTAGGGATACAATA
AATGAAATGATCACAAATCCAAAATATGCAAATGTTGTTAAGCAATTATCACTCTTAGCT
AAAGATCGTCCAATGAATGCACAAGAAACAGCAATATATTGGATCGAATATGTCATAAGA
CATCATGGAGCACCTCATTTACATTATCCAAGTGCTGATTTAAACTTCTTCCAAGATAAT
TCACTTGATGTTATTGCATTTTTAGTTTTTACTGTTTATGTGATCTTTAAAATTCTTGCT
TTCATTTGTAAAAAGATTTTTTGTGGAAGTAAGAAATCTAAAGATAAATTGAAAAAAAAT
TAAATAACTAAAAGAATGTTAAACTTAATTTTTATTTGAAGCATTTT
>g803.t10 Gene=g803 Length=460
MPVFIESAKILIVFSTISKSHVMPLEVVAKLLAERNHEVTFFTPFPSGKAIKNLREVQIP
FDEKDKEFLNQIAKNPEDSSMFTMMKEMPKLITKTGNTTLQLPEMRRIMKEEKFDLLING
YFMTEFILGLGDHFKVPTINFFMNIIDVLVMRQIANYIGKEVYNYNFPPDQYRSYEESLR
NVSLVLLNTHFSSARPRPYLPNMIEVGGLQVKPNPSPLPNDLKTFLDEAEDGAILFSLGS
NAKSTFLPENTIKTLLKAFSQIKQRVVMKWESDTLKGKPENVFISKWLPQDDVLAHKNIK
LFISHCGFGGLIEAKYHGVPILGIPLFADQPANADMIEKEGWGKQISINTITADELRDTI
NEMITNPKYANVVKQLSLLAKDRPMNAQETAIYWIEYVIRHHGAPHLHYPSADLNFFQDN
SLDVIAFLVFTVYVIFKILAFICKKIFCGSKKSKDKLKKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g803.t10 | CDD | cd03784 | GT1_Gtf-like | 8 | 397 | 9.14286E-72 |
| 7 | g803.t10 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 8 | 211 | 1.4E-10 |
| 6 | g803.t10 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 213 | 382 | 2.5E-47 |
| 2 | g803.t10 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 16 | 430 | 1.3E-105 |
| 3 | g803.t10 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 16 | 430 | 1.3E-105 |
| 1 | g803.t10 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 175 | 451 | 1.0E-67 |
| 9 | g803.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 423 | - |
| 10 | g803.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 424 | 443 | - |
| 8 | g803.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 444 | 460 | - |
| 5 | g803.t10 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 9 | 407 | 8.38E-99 |
| 4 | g803.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 424 | 443 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
