General information for g803.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g803 is located on chr_3: 6102476..6103584 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g803 | g803.t14 | TSS | g803.t14 | 6102375 | 6102375 |
| chr_3 | g803 | g803.t14 | isoform | g803.t14 | 6102476 | 6103584 |
| chr_3 | g803 | g803.t14 | exon | g803.t14.exon1 | 6102476 | 6102523 |
| chr_3 | g803 | g803.t14 | exon | g803.t14.exon2 | 6102870 | 6102990 |
| chr_3 | g803 | g803.t14 | cds | g803.t14.CDS1 | 6102977 | 6102990 |
| chr_3 | g803 | g803.t14 | exon | g803.t14.exon3 | 6103044 | 6103584 |
| chr_3 | g803 | g803.t14 | cds | g803.t14.CDS2 | 6103044 | 6103206 |
| chr_3 | g803 | g803.t14 | TTS | g803.t14 | 6103586 | 6103586 |
Sequences
>g803.t14 Gene=g803 Length=710
CCTTTTGTTATCTTTACATAATCCCTGGTGAAATAGGAAAAAGTAAAGATCATCCGGGTC
ATTGTTATTCAAGAGAACATAGTGTATTGTTAAAAGTAGGCGAAACAACTCATACAAATC
AATGTGAAGAAATTTCTTGTTATGATGATTATTCAATGAGAATTGCTGGTTGCGGAACAT
TCTCTATACAAGATCCAAAATGTAAAAAATTTATTCGTGATCTATCTAAGCCATATCCAA
CATGTTGTACATCATTTATTTGCGTAGAACCAGTTGATGTTTTTGAAACTTCAAATCACC
TTGATCAAGTTGATAGAAATTCATTAGAATAAAATTTCATCTTTAAAAAACGACATGGAA
TTGGCGACTTTCAATATCAAAATCATAAAACAGGAGGAGAAAAAATTTTTCATTTTAATG
AACCATCAAATTTCAATTAACTTTTTATAGAGCTGACAATTCATTTTTTCTTCTTCTTTC
TCGCGGTCAAAACCAACTTTCATCGTCATATCAATTAAATAGTTTTTATTTCTTTCATGT
TTTAATGTGATCCATTAATTTTAATTCGATAAATAAATGAAAACCATTTAAAATCATCAT
AAATGCATGTCGCTGTTTCCCCTCCTCTTGCTGGCCATTCACTCCCTCTTTTTGCCTATA
CCGCATTGTCATTTATTGATTAATTAATAAAATATATATTTTTATACTTT
>g803.t14 Gene=g803 Length=58
MRIAGCGTFSIQDPKCKKFIRDLSKPYPTCCTSFICVEPVDVFETSNHLDQVDRNSLE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g803.t14 | Pfam | PF15430 | Single domain von Willebrand factor type C | 2 | 36 | 2.7e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
