General information for g803.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g803 is located on chr_3: 6102476..6103584 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g803 | g803.t6 | TSS | g803.t6 | 6097493 | 6097493 |
| chr_3 | g803 | g803.t6 | isoform | g803.t6 | 6097572 | 6099155 |
| chr_3 | g803 | g803.t6 | exon | g803.t6.exon1 | 6097572 | 6098122 |
| chr_3 | g803 | g803.t6 | cds | g803.t6.CDS1 | 6097572 | 6098122 |
| chr_3 | g803 | g803.t6 | exon | g803.t6.exon2 | 6098402 | 6098469 |
| chr_3 | g803 | g803.t6 | cds | g803.t6.CDS2 | 6098402 | 6098469 |
| chr_3 | g803 | g803.t6 | exon | g803.t6.exon3 | 6098538 | 6098857 |
| chr_3 | g803 | g803.t6 | cds | g803.t6.CDS3 | 6098538 | 6098581 |
| chr_3 | g803 | g803.t6 | exon | g803.t6.exon4 | 6098911 | 6099155 |
| chr_3 | g803 | g803.t6 | TTS | g803.t6 | 6099403 | 6099403 |
Sequences
>g803.t6 Gene=g803 Length=1184
ATGCCAGTATTTATTGAAAGTGCTAAAATATTGATAGTGTTCTCAACAATTAGTAAATCC
CATGTGATGCCTTTAGAAGTAGTGGCAAAATTATTAGCCGAAAGAAATCATGAAGTAACT
TTTTTCACTCCATTTCCAAGTGGCAAGGCAATTAAGAACTTAAGAGAGGTTCAAATTCCA
TTCGACGAAAAAGATAAAGAGTTTTTGAATCAAATAGCAAAAAATCCAGAGGATTCAAGT
ATGTTTACAATGATGAAAGAAATGCCGAAGCTTATTACTAAAACTGGAAATACAACTTTA
CAATTGCCTGAAATGAGAAGAATAATGAAGGAAGAAAAGTTTGACCTTTTAATTAATGGT
TACTTCATGACAGAATTTATTCTTGGCCTTGGCGATCATTTTAAAGTGCCAACTATTGTA
TTTTCACCTGCTGGAGCGTTAGGAAATATTCATAGAATGTTAGGTAATCCGCTTTCACCT
TCTGGTGCACCACATGTTTTAGCGCAATCTGTGGAATTTAATTTCGTTGGAAGAATCAAA
AACTTCTTTATTCCTTTGCCTAATGATCTCAAAACATTCCTTGATGAAGCTGAAGATGGT
GCAATTTTATTTAGTTTAGATAAAACAGAGAGTTGTAATGAAATGGGAATCAGATACACT
TAAAGGAAAACCTGAAAATGTTTTCATTAGCAAATGGTTACCACAAGATGATGTTTTAGC
ACATAAAAATATAAAATTGTTCATTTCACATTGTGGCTTTGGTGGACTTATTGAAGCTAA
ATATCATGGCGTTCCTATTCTTGGTATTCCATTATTTGCTGACCAACCAGCTAATGCTGA
CATGATTGAAAAAGAAGGATGGGGTAAACAAATTTCAATAAATACAATCACAGCTGATGA
GCTTAGGGATACAATAAATGAAATGATCACAAATCCAAAATATGCAAATGTTGTTAAGCA
ATTATCACTCTTAGCTAAAGATCGTCCAATGAATGCACAAGAAACAGCAATATATTGGAT
CGAATATGTCATAAGACATCATGGAGCACCTCATTTACATTATCCAAGTGCTGATTTAAA
CTTCTTCCAAGATAATTCACTTGATGTTATTGCATTTTTAGTTTTTACTGTTTATGTGAT
CTTTAAAATTCTTGCTTTCATTTGTAAAAAGATTTTTTGTGGAA
>g803.t6 Gene=g803 Length=220
MPVFIESAKILIVFSTISKSHVMPLEVVAKLLAERNHEVTFFTPFPSGKAIKNLREVQIP
FDEKDKEFLNQIAKNPEDSSMFTMMKEMPKLITKTGNTTLQLPEMRRIMKEEKFDLLING
YFMTEFILGLGDHFKVPTIVFSPAGALGNIHRMLGNPLSPSGAPHVLAQSVEFNFVGRIK
NFFIPLPNDLKTFLDEAEDGAILFSLDKTESCNEMGIRYT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g803.t6 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 8 | 208 | 0 |
| 1 | g803.t6 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 4 | 183 | 0 |
| 2 | g803.t6 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 4 | 183 | 0 |
| 3 | g803.t6 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 8 | 196 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed