General information for g803.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 2B1.
Parent gene
- The parent gene g803 is located on chr_3: 6102476..6103584 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g803 | g803.t8 | TSS | g803.t8 | 6097493 | 6097493 |
| chr_3 | g803 | g803.t8 | isoform | g803.t8 | 6097572 | 6099155 |
| chr_3 | g803 | g803.t8 | exon | g803.t8.exon1 | 6097572 | 6098185 |
| chr_3 | g803 | g803.t8 | cds | g803.t8.CDS1 | 6097572 | 6098185 |
| chr_3 | g803 | g803.t8 | exon | g803.t8.exon2 | 6098330 | 6098857 |
| chr_3 | g803 | g803.t8 | cds | g803.t8.CDS2 | 6098330 | 6098857 |
| chr_3 | g803 | g803.t8 | exon | g803.t8.exon3 | 6098911 | 6099155 |
| chr_3 | g803 | g803.t8 | cds | g803.t8.CDS3 | 6098911 | 6099154 |
| chr_3 | g803 | g803.t8 | TTS | g803.t8 | 6099403 | 6099403 |
Sequences
>g803.t8 Gene=g803 Length=1387
ATGCCAGTATTTATTGAAAGTGCTAAAATATTGATAGTGTTCTCAACAATTAGTAAATCC
CATGTGATGCCTTTAGAAGTAGTGGCAAAATTATTAGCCGAAAGAAATCATGAAGTAACT
TTTTTCACTCCATTTCCAAGTGGCAAGGCAATTAAGAACTTAAGAGAGGTTCAAATTCCA
TTCGACGAAAAAGATAAAGAGTTTTTGAATCAAATAGCAAAAAATCCAGAGGATTCAAGT
ATGTTTACAATGATGAAAGAAATGCCGAAGCTTATTACTAAAACTGGAAATACAACTTTA
CAATTGCCTGAAATGAGAAGAATAATGAAGGAAGAAAAGTTTGACCTTTTAATTAATGGT
TACTTCATGACAGAATTTATTCTTGGCCTTGGCGATCATTTTAAAGTGCCAACTATTGTA
TTTTCACCTGCTGGAGCGTTAGGAAATATTCATAGAATGTTAGGTAATCCGCTTTCACCT
TCTGGTGCACCACATGTTTTAGCGCAATCTGTGGAATTTAATTTCGTTGGAAGAATCAAA
AACTTCTTTATGAACATTATCGATGTATTGGTAATGAGACAAATTGCCAATTACATTGGC
AAAGAAGTTTACAATTCTGCAAGACCTCGTCCTTATTTACCAAATATGATTGAAGTTGGT
GGCCTTCAAGTGAAACCAAATCCAAGTCCTTTGCCTAATGATCTCAAAACATTCCTTGAT
GAAGCTGAAGATGGTGCAATTTTATTTAGTTTAGGTTCAAATGCAAAAAGCACTTTTCTG
CCAGAGAATACGATCAAAACTTTACTCAAAGCTTTTTCACAGATAAAACAGAGAGTTGTA
ATGAAATGGGAATCAGATACACTTAAAGGAAAACCTGAAAATGTTTTCATTAGCAAATGG
TTACCACAAGATGATGTTTTAGCACATAAAAATATAAAATTGTTCATTTCACATTGTGGC
TTTGGTGGACTTATTGAAGCTAAATATCATGGCGTTCCTATTCTTGGTATTCCATTATTT
GCTGACCAACCAGCTAATGCTGACATGATTGAAAAAGAAGGATGGGGTAAACAAATTTCA
ATAAATACAATCACAGCTGATGAGCTTAGGGATACAATAAATGAAATGATCACAAATCCA
AAATATGCAAATGTTGTTAAGCAATTATCACTCTTAGCTAAAGATCGTCCAATGAATGCA
CAAGAAACAGCAATATATTGGATCGAATATGTCATAAGACATCATGGAGCACCTCATTTA
CATTATCCAAGTGCTGATTTAAACTTCTTCCAAGATAATTCACTTGATGTTATTGCATTT
TTAGTTTTTACTGTTTATGTGATCTTTAAAATTCTTGCTTTCATTTGTAAAAAGATTTTT
TGTGGAA
>g803.t8 Gene=g803 Length=462
MPVFIESAKILIVFSTISKSHVMPLEVVAKLLAERNHEVTFFTPFPSGKAIKNLREVQIP
FDEKDKEFLNQIAKNPEDSSMFTMMKEMPKLITKTGNTTLQLPEMRRIMKEEKFDLLING
YFMTEFILGLGDHFKVPTIVFSPAGALGNIHRMLGNPLSPSGAPHVLAQSVEFNFVGRIK
NFFMNIIDVLVMRQIANYIGKEVYNSARPRPYLPNMIEVGGLQVKPNPSPLPNDLKTFLD
EAEDGAILFSLGSNAKSTFLPENTIKTLLKAFSQIKQRVVMKWESDTLKGKPENVFISKW
LPQDDVLAHKNIKLFISHCGFGGLIEAKYHGVPILGIPLFADQPANADMIEKEGWGKQIS
INTITADELRDTINEMITNPKYANVVKQLSLLAKDRPMNAQETAIYWIEYVIRHHGAPHL
HYPSADLNFFQDNSLDVIAFLVFTVYVIFKILAFICKKIFCG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g803.t8 | CDD | cd03784 | GT1_Gtf-like | 8 | 410 | 2.47021E-72 |
| 7 | g803.t8 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 8 | 181 | 1.8E-12 |
| 6 | g803.t8 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 226 | 395 | 2.5E-47 |
| 2 | g803.t8 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 16 | 443 | 2.5E-107 |
| 3 | g803.t8 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 16 | 443 | 2.5E-107 |
| 1 | g803.t8 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 201 | 459 | 3.4E-65 |
| 9 | g803.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 436 | - |
| 10 | g803.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 437 | 456 | - |
| 8 | g803.t8 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 457 | 462 | - |
| 5 | g803.t8 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 9 | 420 | 2.09E-98 |
| 4 | g803.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 437 | 456 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
