General information for g8037.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription initiation factor TFIID subunit 8.
Parent gene
- The parent gene g8037 is located on chr_2: 28176644..28177784 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8037 | g8037.t1 | isoform | g8037.t1 | 28175613 | 28176644 |
| chr_2 | g8037 | g8037.t1 | exon | g8037.t1.exon1 | 28175613 | 28175730 |
| chr_2 | g8037 | g8037.t1 | cds | g8037.t1.CDS1 | 28175613 | 28175730 |
| chr_2 | g8037 | g8037.t1 | exon | g8037.t1.exon2 | 28175788 | 28175909 |
| chr_2 | g8037 | g8037.t1 | cds | g8037.t1.CDS2 | 28175788 | 28175909 |
| chr_2 | g8037 | g8037.t1 | exon | g8037.t1.exon3 | 28175964 | 28176644 |
| chr_2 | g8037 | g8037.t1 | cds | g8037.t1.CDS3 | 28175964 | 28176644 |
| chr_2 | g8037 | g8037.t1 | TTS | g8037.t1 | 28176727 | 28176727 |
| chr_2 | g8037 | g8037.t1 | TSS | g8037.t1 | NA | NA |
Sequences
>g8037.t1 Gene=g8037 Length=921
ATGAACGATTCTAGAAGGAAAATAATGAAAGAAGCAGTGTGTCTTCTAGTTTCAGAAGCT
GGATTTTCAACTGCAACAGAAGAAAGTTTAGAAACACTCACGGAAATGTTGATAGGACTA
ACATGTGAAATTGCAAATCAAACTAGAAACTATGCAGAACTTGCTGGAAGAACACAATCA
GTAGTTGGAGATGTACTGATGGCATTGATAAACATGGGAATTGGGTTTAAAGATCTTGAT
AAATATGCCTTAAGAGAAAATAGACCCATGGCAAGAAATATGAATCCAAATCAAGCGCAG
AAGCCTCTTCAAATATTACAAGCAGGAACAAAACCATCAAATCCAGTTCATATACCAAGT
TATCTTCCACCGCTGCCTGATCCACATGCTTATGTACGAACTGCCACTTATAAACAGCCA
GAAACTGAATACGAAAGTATTCGAGAGAAATCAGCAAATCAAAAGAGAGATATTGAAAAA
GCTTTAACTAAATTCTTAGCTAAAACTTGTGCAGAAACACACAACTTATTTGATAATGAA
GAAGTTCAAATGTTTCCACTTATTGCTAGTAAACCCACAACGGTTCCTGCATATCTTTCG
GCTCTCAATCCACTAGATCAAATATTTGATTTCGAAGAATTAGAGTATTATTATCAGGTA
GCAAATAGAAAACCAGACAATGACGAAGTCGAGTCAGAGGGTGAAGAAAAACGAGAGAAT
GAGAATGAAGAGCGAGAAGCTGTTTCACCTCCAAAAAAGAGAAAGAACAAAAAGTCTGAT
CAAAAGAAAGACTCAGATACAGCAATTATGAGACCACCATCACCTCCTGTTGATCAAAAA
CCACAGCCACTACCACAAGAAGAAGAGAAAATAATTGACAATCCTTTCTTGAAATTAAAG
AAAACAACTATCACTTCATAA
>g8037.t1 Gene=g8037 Length=306
MNDSRRKIMKEAVCLLVSEAGFSTATEESLETLTEMLIGLTCEIANQTRNYAELAGRTQS
VVGDVLMALINMGIGFKDLDKYALRENRPMARNMNPNQAQKPLQILQAGTKPSNPVHIPS
YLPPLPDPHAYVRTATYKQPETEYESIREKSANQKRDIEKALTKFLAKTCAETHNLFDNE
EVQMFPLIASKPTTVPAYLSALNPLDQIFDFEELEYYYQVANRKPDNDEVESEGEEKREN
ENEEREAVSPPKKRKNKKSDQKKDSDTAIMRPPSPPVDQKPQPLPQEEEKIIDNPFLKLK
KTTITS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8037.t1 | CDD | cd08049 | TAF8 | 117 | 169 | 1.0171E-19 |
| 8 | g8037.t1 | Coils | Coil | Coil | 144 | 164 | - |
| 7 | g8037.t1 | Gene3D | G3DSA:1.10.20.10 | Histone | 1 | 91 | 6.0E-21 |
| 6 | g8037.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 306 | - |
| 5 | g8037.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 267 | - |
| 3 | g8037.t1 | PANTHER | PTHR46469 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 | 3 | 295 | 3.0E-59 |
| 1 | g8037.t1 | Pfam | PF07524 | Bromodomain associated | 4 | 74 | 1.6E-14 |
| 2 | g8037.t1 | Pfam | PF10406 | Transcription factor TFIID complex subunit 8 C-term | 117 | 165 | 2.8E-19 |
| 4 | g8037.t1 | SMART | SM00576 | 17neu3 | 2 | 78 | 1.0E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046982 | protein heterodimerization activity | MF |
| GO:0005669 | transcription factor TFIID complex | CC |
KEGG
Orthology
- This transcript has been annotated with K14649 (transcription initiation factor TFIID subunit 8)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
