Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Deoxynucleoside triphosphate triphosphohydrolase SAMHD1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8038 g8038.t1 TTS g8038.t1 28176653 28176653
chr_2 g8038 g8038.t1 isoform g8038.t1 28176853 28178523
chr_2 g8038 g8038.t1 exon g8038.t1.exon1 28176853 28177790
chr_2 g8038 g8038.t1 cds g8038.t1.CDS1 28176853 28177790
chr_2 g8038 g8038.t1 exon g8038.t1.exon2 28177855 28177924
chr_2 g8038 g8038.t1 cds g8038.t1.CDS2 28177855 28177924
chr_2 g8038 g8038.t1 exon g8038.t1.exon3 28178251 28178523
chr_2 g8038 g8038.t1 cds g8038.t1.CDS3 28178251 28178523
chr_2 g8038 g8038.t1 TSS g8038.t1 28179112 28179112

Sequences

>g8038.t1 Gene=g8038 Length=1281
ATGACGTTTTCTTTAAAAGATCCTGTACATGGATGGATTGAGCTCCCTAGTTATACGAAA
GAAATTATTGCATCTTCGACCTTTCAAAGATTACGTAATCTTAAACAACTCGGAGTGTCA
AACTACTATTACAAAAATGCGACTCATTCACGTTATGAACATTCAATTGGAACCAGCTTC
ATTGCACAGTCTTTGCTTAACATTTTAGAGAAGAACTCTAATATCAAAATTGACGACAAA
TTGAAAAAATGTGTTATATTGGCTGCTCTTATGCATGACATTGGTCATGGAGCATTTTCA
CATTTATGGGAGGATTGTGTACATCAAGGCAATGATAATAAATGGACACATGAAGATCAA
TCTGTCAAATTGATTAAATACATGATTTGCAATGATAAAATCAAACTTGACGATGATGTT
CAATCACATGAGTGGATGCTTGAATTTATATGTTCATTGATTGTTGGAAATGCAGAAGCT
TGGTTGAGACTTCTAAAGCCTTCACAATATTTTCTCACCGAAATTGTCAGCAATAAATTA
TGTAATATCGATGTCGATAAATGTGATTATTTGTGTCGTGATTATTATTATGTAAAATTG
AAGTGTCTTCCTTTCATGGATTTTTTGAATCGTGCAAAGATCGTATGTGATGTTAACTTT
TTCACACACATTGGATATCATGCAGATGATTTCTATTTGATTGAAAATATGTTTAAAAAT
CGTGCAAAATATCATGATAAAGTATATCAACTACCTCAAGTCTCAGCTGCAGAACGCCAA
CTTAAAGATATTTGCATTCTAGCTGACAAGGCTGGATTTAAAATGATGGGACTTCGCATA
ACTGAAATACAACAAAATTGTGAAATTTATAACCAATTAGATGACACTATTTTGGATTTA
ATTCGTAATGAAAAGACGATATGTAATGATATAATGATGAAAGCTCAAGAATTAATTCGA
CAATTGGATAATGACAAATTTTATATTAATATATATGAAACCAAAGATAAAGACGAGGCA
GATTATATATATGGAGAGCTCAAAGGCAAATTTGGTGATGTGTTTGTCAAAGTAAAAAAA
GTTATCCCAAATGCAAATGTACCAAAAAACATACCACTCTATAACAATGATGGACTACTC
GTGAAAAAGTTGAGTGAGCATAATTTGGAGTATGAATCAACACTCATATATTGCACTGCT
TTCGATGATACAACTGTTAAAAATGTAAAGAACTATCTTAACAAATACAACAATAATAAT
AATGATGAAGAAAGTGCATAA

>g8038.t1 Gene=g8038 Length=426
MTFSLKDPVHGWIELPSYTKEIIASSTFQRLRNLKQLGVSNYYYKNATHSRYEHSIGTSF
IAQSLLNILEKNSNIKIDDKLKKCVILAALMHDIGHGAFSHLWEDCVHQGNDNKWTHEDQ
SVKLIKYMICNDKIKLDDDVQSHEWMLEFICSLIVGNAEAWLRLLKPSQYFLTEIVSNKL
CNIDVDKCDYLCRDYYYVKLKCLPFMDFLNRAKIVCDVNFFTHIGYHADDFYLIENMFKN
RAKYHDKVYQLPQVSAAERQLKDICILADKAGFKMMGLRITEIQQNCEIYNQLDDTILDL
IRNEKTICNDIMMKAQELIRQLDNDKFYINIYETKDKDEADYIYGELKGKFGDVFVKVKK
VIPNANVPKNIPLYNNDGLLVKKLSEHNLEYESTLIYCTAFDDTTVKNVKNYLNKYNNNN
NDEESA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8038.t1 CDD cd00077 HDc 49 199 8.96657E-10
6 g8038.t1 Coils Coil Coil 406 426 -
5 g8038.t1 Gene3D G3DSA:1.10.3210.10 Hypothetical protein af1432 4 325 1.5E-78
2 g8038.t1 PANTHER PTHR11373 DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE 5 346 2.6E-76
1 g8038.t1 Pfam PF01966 HD domain 51 193 6.3E-12
4 g8038.t1 SMART SM00471 hd_13 47 200 1.2E-7
3 g8038.t1 SUPERFAMILY SSF109604 HD-domain/PDEase-like 4 380 5.24E-61

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values