General information for g8038.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8038 is located on chr_2: 28177435..28179274 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8038 | g8038.t2 | isoform | g8038.t2 | 28176644 | 28177593 |
| chr_2 | g8038 | g8038.t2 | exon | g8038.t2.exon1 | 28176644 | 28177593 |
| chr_2 | g8038 | g8038.t2 | TTS | g8038.t2 | 28176653 | 28176653 |
| chr_2 | g8038 | g8038.t2 | cds | g8038.t2.CDS1 | 28176853 | 28177518 |
| chr_2 | g8038 | g8038.t2 | TSS | g8038.t2 | NA | NA |
Sequences
>g8038.t2 Gene=g8038 Length=950
TGTAATATCGATGTCGATAAATGTGATTATTTGTGTCGTGATTATTATTATGTAAAATTG
AAGTGTCTTCCTTTCATGGATTTTTTGAATCGTGCAAAGATCGTATGTGATGTTAACTTT
TTCACACACATTGGATATCATGCAGATGATTTCTATTTGATTGAAAATATGTTTAAAAAT
CGTGCAAAATATCATGATAAAGTATATCAACTACCTCAAGTCTCAGCTGCAGAACGCCAA
CTTAAAGATATTTGCATTCTAGCTGACAAGGCTGGATTTAAAATGATGGGACTTCGCATA
ACTGAAATACAACAAAATTGTGAAATTTATAACCAATTAGATGACACTATTTTGGATTTA
ATTCGTAATGAAAAGACGATATGTAATGATATAATGATGAAAGCTCAAGAATTAATTCGA
CAATTGGATAATGACAAATTTTATATTAATATATATGAAACCAAAGATAAAGACGAGGCA
GATTATATATATGGAGAGCTCAAAGGCAAATTTGGTGATGTGTTTGTCAAAGTAAAAAAA
GTTATCCCAAATGCAAATGTACCAAAAAACATACCACTCTATAACAATGATGGACTACTC
GTGAAAAAGTTGAGTGAGCATAATTTGGAGTATGAATCAACACTCATATATTGCACTGCT
TTCGATGATACAACTGTTAAAAATGTAAAGAACTATCTTAACAAATACAACAATAATAAT
AATGATGAAGAAAGTGCATAAATGTGTTCAAGTGATGATGAAACTGCGTACATAATTTTA
CATTGTAGCAATAGATATACCTAAAAAAGAATGATTTTATCAGATTTTACTTTAAAATGT
AAATTAATTTGAAAAATTTAAATTCATTATTTATTTTATTTTTATTATAAAAATCATATA
AGCACGAATAAAGATAATTAAAAGTAAGTCATTTTATAAAAAAATTAAAT
>g8038.t2 Gene=g8038 Length=221
MDFLNRAKIVCDVNFFTHIGYHADDFYLIENMFKNRAKYHDKVYQLPQVSAAERQLKDIC
ILADKAGFKMMGLRITEIQQNCEIYNQLDDTILDLIRNEKTICNDIMMKAQELIRQLDND
KFYINIYETKDKDEADYIYGELKGKFGDVFVKVKKVIPNANVPKNIPLYNNDGLLVKKLS
EHNLEYESTLIYCTAFDDTTVKNVKNYLNKYNNNNNDEESA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8038.t2 | Coils | Coil | Coil | 201 | 221 | - |
| 2 | g8038.t2 | Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | 1 | 120 | 2.6E-11 |
| 1 | g8038.t2 | SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | 18 | 148 | 2.04E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
