General information for g8038.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8038 is located on chr_2: 28177435..28179274 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8038 | g8038.t3 | TTS | g8038.t3 | 28176653 | 28176653 |
| chr_2 | g8038 | g8038.t3 | isoform | g8038.t3 | 28176853 | 28177924 |
| chr_2 | g8038 | g8038.t3 | exon | g8038.t3.exon1 | 28176853 | 28177790 |
| chr_2 | g8038 | g8038.t3 | cds | g8038.t3.CDS1 | 28176853 | 28177752 |
| chr_2 | g8038 | g8038.t3 | exon | g8038.t3.exon2 | 28177855 | 28177924 |
| chr_2 | g8038 | g8038.t3 | TSS | g8038.t3 | 28178701 | 28178701 |
Sequences
>g8038.t3 Gene=g8038 Length=1008
CATGACATTGGTCATGGAGCATTTTCACATTTATGGGAGGATTGTGTACATCAAGGCAAT
GATAATAAATGGACACATGAAGATCAATCTGTCAAATTGATTAAATACATGATTTGCAAT
GATAAAATCAAACTTGACGATGATGTTCAATCACATGAGTGGATGCTTGAATTTATATGT
TCATTGATTGTTGGAAATGCAGAAGCTTGGTTGAGACTTCTAAAGCCTTCACAATATTTT
CTCACCGAAATTGTCAGCAATAAATTATGTAATATCGATGTCGATAAATGTGATTATTTG
TGTCGTGATTATTATTATGTAAAATTGAAGTGTCTTCCTTTCATGGATTTTTTGAATCGT
GCAAAGATCGTATGTGATGTTAACTTTTTCACACACATTGGATATCATGCAGATGATTTC
TATTTGATTGAAAATATGTTTAAAAATCGTGCAAAATATCATGATAAAGTATATCAACTA
CCTCAAGTCTCAGCTGCAGAACGCCAACTTAAAGATATTTGCATTCTAGCTGACAAGGCT
GGATTTAAAATGATGGGACTTCGCATAACTGAAATACAACAAAATTGTGAAATTTATAAC
CAATTAGATGACACTATTTTGGATTTAATTCGTAATGAAAAGACGATATGTAATGATATA
ATGATGAAAGCTCAAGAATTAATTCGACAATTGGATAATGACAAATTTTATATTAATATA
TATGAAACCAAAGATAAAGACGAGGCAGATTATATATATGGAGAGCTCAAAGGCAAATTT
GGTGATGTGTTTGTCAAAGTAAAAAAAGTTATCCCAAATGCAAATGTACCAAAAAACATA
CCACTCTATAACAATGATGGACTACTCGTGAAAAAGTTGAGTGAGCATAATTTGGAGTAT
GAATCAACACTCATATATTGCACTGCTTTCGATGATACAACTGTTAAAAATGTAAAGAAC
TATCTTAACAAATACAACAATAATAATAATGATGAAGAAAGTGCATAA
>g8038.t3 Gene=g8038 Length=299
MICNDKIKLDDDVQSHEWMLEFICSLIVGNAEAWLRLLKPSQYFLTEIVSNKLCNIDVDK
CDYLCRDYYYVKLKCLPFMDFLNRAKIVCDVNFFTHIGYHADDFYLIENMFKNRAKYHDK
VYQLPQVSAAERQLKDICILADKAGFKMMGLRITEIQQNCEIYNQLDDTILDLIRNEKTI
CNDIMMKAQELIRQLDNDKFYINIYETKDKDEADYIYGELKGKFGDVFVKVKKVIPNANV
PKNIPLYNNDGLLVKKLSEHNLEYESTLIYCTAFDDTTVKNVKNYLNKYNNNNNDEESA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8038.t3 | Coils | Coil | Coil | 279 | 299 | - |
| 3 | g8038.t3 | Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | 2 | 198 | 1.6E-25 |
| 1 | g8038.t3 | PANTHER | PTHR11373 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE | 12 | 221 | 1.3E-25 |
| 2 | g8038.t3 | SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | 20 | 253 | 2.2E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed