General information for g8038.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8038 is located on chr_2: 28177435..28179274 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8038 | g8038.t4 | TTS | g8038.t4 | 28176653 | 28176653 |
| chr_2 | g8038 | g8038.t4 | isoform | g8038.t4 | 28176853 | 28178523 |
| chr_2 | g8038 | g8038.t4 | exon | g8038.t4.exon1 | 28176853 | 28177530 |
| chr_2 | g8038 | g8038.t4 | cds | g8038.t4.CDS1 | 28176853 | 28177425 |
| chr_2 | g8038 | g8038.t4 | exon | g8038.t4.exon2 | 28177593 | 28177790 |
| chr_2 | g8038 | g8038.t4 | exon | g8038.t4.exon3 | 28177855 | 28177924 |
| chr_2 | g8038 | g8038.t4 | exon | g8038.t4.exon4 | 28178251 | 28178523 |
| chr_2 | g8038 | g8038.t4 | TSS | g8038.t4 | 28179112 | 28179112 |
Sequences
>g8038.t4 Gene=g8038 Length=1219
ATGACGTTTTCTTTAAAAGATCCTGTACATGGATGGATTGAGCTCCCTAGTTATACGAAA
GAAATTATTGCATCTTCGACCTTTCAAAGATTACGTAATCTTAAACAACTCGGAGTGTCA
AACTACTATTACAAAAATGCGACTCATTCACGTTATGAACATTCAATTGGAACCAGCTTC
ATTGCACAGTCTTTGCTTAACATTTTAGAGAAGAACTCTAATATCAAAATTGACGACAAA
TTGAAAAAATGTGTTATATTGGCTGCTCTTATGCATGACATTGGTCATGGAGCATTTTCA
CATTTATGGGAGGATTGTGTACATCAAGGCAATGATAATAAATGGACACATGAAGATCAA
TCTGTCAAATTGATTAAATACATGATTTGCAATGATAAAATCAAACTTGACGATGATGTT
CAATCACATGAGTGGATGCTTGAATTTATATGTTCATTGATTGTTGGAAATGCAGAAGCT
TGGTTGAGACTTCTAAAGCCTTCACAATATTTTCTCACCGAAATTGTCAGCAATAAATTA
TTGTCTTCCTTTCATGGATTTTTTGAATCGTGCAAAGATCGTATGTGATGTTAACTTTTT
CACACACATTGGATATCATGCAGATGATTTCTATTTGATTGAAAATATGTTTAAAAATCG
TGCAAAATATCATGATAAAGTATATCAACTACCTCAAGTCTCAGCTGCAGAACGCCAACT
TAAAGATATTTGCATTCTAGCTGACAAGGCTGGATTTAAAATGATGGGACTTCGCATAAC
TGAAATACAACAAAATTGTGAAATTTATAACCAATTAGATGACACTATTTTGGATTTAAT
TCGTAATGAAAAGACGATATGTAATGATATAATGATGAAAGCTCAAGAATTAATTCGACA
ATTGGATAATGACAAATTTTATATTAATATATATGAAACCAAAGATAAAGACGAGGCAGA
TTATATATATGGAGAGCTCAAAGGCAAATTTGGTGATGTGTTTGTCAAAGTAAAAAAAGT
TATCCCAAATGCAAATGTACCAAAAAACATACCACTCTATAACAATGATGGACTACTCGT
GAAAAAGTTGAGTGAGCATAATTTGGAGTATGAATCAACACTCATATATTGCACTGCTTT
CGATGATACAACTGTTAAAAATGTAAAGAACTATCTTAACAAATACAACAATAATAATAA
TGATGAAGAAAGTGCATAA
>g8038.t4 Gene=g8038 Length=190
MFKNRAKYHDKVYQLPQVSAAERQLKDICILADKAGFKMMGLRITEIQQNCEIYNQLDDT
ILDLIRNEKTICNDIMMKAQELIRQLDNDKFYINIYETKDKDEADYIYGELKGKFGDVFV
KVKKVIPNANVPKNIPLYNNDGLLVKKLSEHNLEYESTLIYCTAFDDTTVKNVKNYLNKY
NNNNNDEESA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8038.t4 | Coils | Coil | Coil | 170 | 190 | - |
| 1 | g8038.t4 | Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | 1 | 89 | 4.0E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
