General information for g805.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 6.
Parent gene
- The parent gene g805 is located on chr_3: 6139077..6140034 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g805 | g805.t4 | TSS | g805.t4 | 6138618 | 6138618 |
| chr_3 | g805 | g805.t4 | isoform | g805.t4 | 6139077 | 6140034 |
| chr_3 | g805 | g805.t4 | exon | g805.t4.exon1 | 6139077 | 6140034 |
| chr_3 | g805 | g805.t4 | cds | g805.t4.CDS1 | 6139412 | 6139942 |
| chr_3 | g805 | g805.t4 | TTS | g805.t4 | 6140017 | 6140017 |
Sequences
>g805.t4 Gene=g805 Length=958
AGGCAAATTTGAAAAAATCTGAATACTTGTGTCGTATTGGAGACAAAAATGCAGCAGTTT
CTGCTTTTAGAAAAACTTACGAGAAAACAGTTTCGCTTGGTCATAGGTTGGATATTATCT
TTCACAACATTCGTATAGGATTATTCTTCTTGGATCATGATTTAATCACCCGCAATATTG
AGAAAGCAAAAACCTTAATTGAAGAAGGAGGTGATTGGGATAGAAGAAATCGCCTAAAAG
TGTATCAAGGAGTTTATTCAGTTGCAATTCGTGATTTCAAAGCTGCAGCTCAATTCTTTT
TAGATACTGTTAGCACTTTCACTAGCTATGAACTGATGGATTATACAACTTTTGTACGAT
ATACTGTTTACACAGCAATCATCAGTTTACCTCGTAATGAATTACGCGATAAAGTAATCA
AAGGTGCAGAAATTCAAGAAGTACTTCATCAGCTTCCTGATGTAAAGGAATATTTATTTT
CTCTCTACAACTGTCATTATGCAGAATTTTTTGTTAATCTTACAAAAGTTGAAAGTTATC
TTAAAGCCGATTACATGGCTAATCCACACTATAGATTTTATGTCCGTGAAATGAGAATTC
TAGCATACACTCAATTGCTCGAGTCATACCGTTCATTGACACTTTCTTATATGGCAGAAG
CTTTTGGTGTTTCTGTAGATTACATTGATGCAGAACTTTCGCGTTTTATTGCTGCTGGTC
GTTTGCACTGTAAAATTGATAAAGTCGGAGGAATTGTCGAAACAAATAGACCTGACAGCA
AAAACTATCAATATCAGGCAACAATCAAGCAAGGAGATTTATTATTAAATCGCATTCAAA
AACTTAGTCGTGTTATAAATATTTAAAGAGCAAATTCGATGCTTTTTTTATTTTAATTCA
TTTAAATGATTTCACAATAAAATATATCTCATTTATCAAAATAATAAACAAGTATTAT
>g805.t4 Gene=g805 Length=176
MDYTTFVRYTVYTAIISLPRNELRDKVIKGAEIQEVLHQLPDVKEYLFSLYNCHYAEFFV
NLTKVESYLKADYMANPHYRFYVREMRILAYTQLLESYRSLTLSYMAEAFGVSVDYIDAE
LSRFIAAGRLHCKIDKVGGIVETNRPDSKNYQYQATIKQGDLLLNRIQKLSRVINI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g805.t4 | Gene3D | G3DSA:1.25.40.570 | - | 1 | 96 | 0.000 |
| 2 | g805.t4 | PANTHER | PTHR14145 | 26S PROTESOME SUBUNIT 6 | 1 | 175 | 0.000 |
| 3 | g805.t4 | PANTHER | PTHR14145:SF1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6 | 1 | 175 | 0.000 |
| 1 | g805.t4 | Pfam | PF01399 | PCI domain | 42 | 144 | 0.000 |
| 8 | g805.t4 | ProSiteProfiles | PS50250 | PCI domain profile. | 1 | 148 | 21.079 |
| 5 | g805.t4 | SMART | SM00088 | PINT_4 | 77 | 160 | 0.000 |
| 6 | g805.t4 | SMART | SM00753 | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 77 | 160 | 0.000 |
| 4 | g805.t4 | SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 72 | 153 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030234 | enzyme regulator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
