General information for g8050.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as WD repeat-containing protein 48-like protein.
Parent gene
- The parent gene g8050 is located on chr_2: 28220551..28221268 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8050 | g8050.t3 | TSS | g8050.t3 | 28218443 | 28218443 |
| chr_2 | g8050 | g8050.t3 | isoform | g8050.t3 | 28219330 | 28220900 |
| chr_2 | g8050 | g8050.t3 | exon | g8050.t3.exon1 | 28219330 | 28219982 |
| chr_2 | g8050 | g8050.t3 | cds | g8050.t3.CDS1 | 28219527 | 28219982 |
| chr_2 | g8050 | g8050.t3 | exon | g8050.t3.exon2 | 28220050 | 28220288 |
| chr_2 | g8050 | g8050.t3 | cds | g8050.t3.CDS2 | 28220050 | 28220288 |
| chr_2 | g8050 | g8050.t3 | exon | g8050.t3.exon3 | 28220358 | 28220553 |
| chr_2 | g8050 | g8050.t3 | cds | g8050.t3.CDS3 | 28220358 | 28220553 |
| chr_2 | g8050 | g8050.t3 | exon | g8050.t3.exon4 | 28220610 | 28220900 |
| chr_2 | g8050 | g8050.t3 | cds | g8050.t3.CDS4 | 28220610 | 28220900 |
| chr_2 | g8050 | g8050.t3 | TTS | g8050.t3 | 28221122 | 28221122 |
Sequences
>g8050.t3 Gene=g8050 Length=1379
ATATCAAATCATTAGTAATTTCTGCTGATGGTAGTCATATCTTGTCAGGAAGTAGTGATG
GAACAATAAAATTATGGAGTGTAGGACAACAAAGATGTCTACAAACAATTCAAGTCCATT
CAGAAGGTGTGTGGTGTCTACTAGTGAACGAAAATTTTACTCATGTCATATCTGGGAGTC
GCGATAAGAAAATTTTTATGACAGAAATTCGCAATCCCTATAACTCAGTGTGTGTGTGTG
AAGAAACATCACCAGTGCTTAATATGTGCTATAACATTGATTATACTGGAATTTGGACTA
CTACATGGAATTCTGATATAAAAATGTGGAAACTTCCGAAAACAGATAAGCTATCAGTGA
AAAGTCAAGAAAATTCTTCTAATCTTTCGTTAAACGAACAGCAAGCAGTTGCACCATTTA
ATACAACGGAAGAAAAGCTAATTAAAGGAGGTGCAGCTGTTGAAAAATATGTAGTTTTGA
ACGATAAGAGATTTATGGTAACACGTGATACAGATCAAAATGTAGCAATTTATGATGTCC
TTAAAGCCGTTCGAGTAGAGAATCTTGGTAAAGTAGATTTCGATGAAGTAGTAAAAAATC
GTAACAAAATGGTATATGTACCTAACTGGTTTACTGTTGATTTGAAAACTGGAATGCCAA
CGATAGTTTTAGGGCAAGATGAAGTCGATTGTTTTTCCGCATGGGTTTCAGCAACGGAGG
CAGGCTTGGGAGTTGGGCAAGCTGAAAATGGATCTGATCCTAAAGTTAATTATGGTAGCT
TATTGTTACAAGCACTTTTAGAATATTGGCCTCAGCCAATGGCAGATATCGACAATGATA
TAAGAGGAAATGAATATTTTAAAGTACCCAAACATACACCAATTTTGTTCAGTGAAGTGG
GCGGTCGTACAGGATGCAGATTATTAGTAAGAGATGCAGCTGGTGATACAGAAAGCGCAT
TATTACACGAAGCAGTACCGTCATGGGTTGCAGACGTGGTTATTGATCGAAACATTCCAC
GGTTTATAAAAATTCCTTTCTTTCTTTTACCTCATCCAGTAATGGTCAAACAAGATCGAA
TGAAAAAAGATCGATTGATTGCCAATGAATTTATACAATGCCGAAAAGTATGTGAACATG
TTCTCGATAAAATACTAGAAAATCCAACTACAACGGGTAATGGAACAGGAGTAAATTCAT
CTCAGAATAATAGTGATACAAGTGAGAGCTCACAAATTCCCGCCGAGGATAAAATAGAAT
TATTATGCAACGATGTCGTATGTGATCCGTCAATGGATTTAAGAACAGTAAAGCATTTCA
TATGGAAGCAATCAAGCGATTTAACTTTTTATTATAAGACGAAGCCAAACTTTAGTTAA
>g8050.t3 Gene=g8050 Length=393
MTEIRNPYNSVCVCEETSPVLNMCYNIDYTGIWTTTWNSDIKMWKLPKTDKLSVKSQENS
SNLSLNEQQAVAPFNTTEEKLIKGGAAVEKYVVLNDKRFMVTRDTDQNVAIYDVLKAVRV
ENLGKVDFDEVVKNRNKMVYVPNWFTVDLKTGMPTIVLGQDEVDCFSAWVSATEAGLGVG
QAENGSDPKVNYGSLLLQALLEYWPQPMADIDNDIRGNEYFKVPKHTPILFSEVGGRTGC
RLLVRDAAGDTESALLHEAVPSWVADVVIDRNIPRFIKIPFFLLPHPVMVKQDRMKKDRL
IANEFIQCRKVCEHVLDKILENPTTTGNGTGVNSSQNNSDTSESSQIPAEDKIELLCNDV
VCDPSMDLRTVKHFIWKQSSDLTFYYKTKPNFS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8050.t3 | CDD | cd17041 | Ubl_WDR48 | 276 | 387 | 4.24615E-37 |
| 4 | g8050.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 345 | - |
| 2 | g8050.t3 | PANTHER | PTHR19862 | WD REPEAT-CONTAINING PROTEIN 48 | 64 | 206 | 8.1E-36 |
| 3 | g8050.t3 | PANTHER | PTHR19862 | WD REPEAT-CONTAINING PROTEIN 48 | 220 | 389 | 8.1E-36 |
| 1 | g8050.t3 | Pfam | PF11816 | Domain of unknown function (DUF3337) | 223 | 387 | 2.5E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
