General information for g807.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein argonaute-3.
Parent gene
- The parent gene g807 is located on chr_3: 6144413..6157649 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g807 | g807.t2 | TSS | g807.t2 | 6141093 | 6141093 |
| chr_3 | g807 | g807.t2 | isoform | g807.t2 | 6141195 | 6144591 |
| chr_3 | g807 | g807.t2 | exon | g807.t2.exon1 | 6141195 | 6141198 |
| chr_3 | g807 | g807.t2 | exon | g807.t2.exon2 | 6142943 | 6143099 |
| chr_3 | g807 | g807.t2 | cds | g807.t2.CDS1 | 6142945 | 6143099 |
| chr_3 | g807 | g807.t2 | exon | g807.t2.exon3 | 6143497 | 6144353 |
| chr_3 | g807 | g807.t2 | cds | g807.t2.CDS2 | 6143497 | 6144353 |
| chr_3 | g807 | g807.t2 | exon | g807.t2.exon4 | 6144413 | 6144591 |
| chr_3 | g807 | g807.t2 | cds | g807.t2.CDS3 | 6144413 | 6144591 |
| chr_3 | g807 | g807.t2 | TTS | g807.t2 | NA | NA |
Sequences
>g807.t2 Gene=g807 Length=1197
ATAGATATGTCATCTGGACGCGGACGTGGATTTTCTGTATTCAGTGCCAAATCATCTGAA
GATGGTGACGATCAAAAATCAGATGAAAGTTCATCTGTTGTTAAACAGACTAGTAGTGGC
CGAGGCAGAGCTTTATCATTTCAACCTGCGTCAACAGATTCCGATGGTGCTTCAACGATT
TCCCAAATTCCATTTACTGGCAGAGGAGCTGGTCGCGGTTTGGGTCGTGGATTTGTTGGC
ATCAGTACTAAATCTAAATCATCTGGATCTGAACCTACGGAATCTAAAAAGGAGAGTACA
AGCGAGGATCAATTTAAAGATATATCTCCAAAAAAATTGTCATCATCGGGACGAGGTGGA
GAAGGAAGTGGATCTGGTCGAGGTCTCAGTAGTTCAGGAAGAGGTTTGACATCAGGATTT
TATAGTGAAGAAAGAAGTGGTGAACATGAAATAACTGCTGGATTACAAACAATGAATATT
CAAGCTGAACAACAGCCACCAACAGTTTTGCCACAAAGATCGACAACAGCTTTGGCTGCT
GAAGCAAGCGCTCAAAGAGTAGAGCCGGAGGTAGATCTTCCAACAGTTATGAAACATGGA
AGAGCGGGCAAAGCATTTGATTCAATAACAAATTGCATAACAATAAAATGTAATAAAGAT
TCTGGCGTATTTGAATATGAAGTTCGTTTTCAACCAGAGATCGATAACATGAGATTAAGA
GGAAAATATTTGGCTCAATTGAAGGATGTAATTGGAAGTATTAAAACATTTGACGGAGTT
ACATTATATTTGCCAAAAAAATTGGAAGAAAACAATATCGAAATAACAACATCATTGGAA
GGTGGTGAAGAAGTTAAAATTAAATTTATCTTTCGACGTCAGAAGCGCTTGGCTGAATGT
GTTCATTTATATAATGTTCTTTTTGAGCGAATTATGGGTATTCTCAATTATCAACGTGTT
GGTCGTAAGTCTTTTGATCCAACTTCTCCGAAAATCATTACACAACATAAACTTGAAGTT
TGGCCTGGTTTCGTAAAAAGCGTTGAAGAGCATGAAGGCGGTCTTATGCTTTTGTTAGAT
GTTTCTCATCGTGTTTTATCACAAAAAACAGTTTTGGAATTTTTCAAAGAATGTATCCAG
AAAACTGATAACTGGAAGGATATGGCTAAAAAAGGAGTCGTTGGCAATATAGTTTTG
>g807.t2 Gene=g807 Length=397
MSSGRGRGFSVFSAKSSEDGDDQKSDESSSVVKQTSSGRGRALSFQPASTDSDGASTISQ
IPFTGRGAGRGLGRGFVGISTKSKSSGSEPTESKKESTSEDQFKDISPKKLSSSGRGGEG
SGSGRGLSSSGRGLTSGFYSEERSGEHEITAGLQTMNIQAEQQPPTVLPQRSTTALAAEA
SAQRVEPEVDLPTVMKHGRAGKAFDSITNCITIKCNKDSGVFEYEVRFQPEIDNMRLRGK
YLAQLKDVIGSIKTFDGVTLYLPKKLEENNIEITTSLEGGEEVKIKFIFRRQKRLAECVH
LYNVLFERIMGILNYQRVGRKSFDPTSPKIITQHKLEVWPGFVKSVEEHEGGLMLLLDVS
HRVLSQKTVLEFFKECIQKTDNWKDMAKKGVVGNIVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g807.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 133 | - |
| 6 | g807.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 63 | - |
| 5 | g807.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 107 | - |
| 4 | g807.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 133 | - |
| 1 | g807.t2 | PANTHER | PTHR22891 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 109 | 397 | 2.1E-55 |
| 2 | g807.t2 | PANTHER | PTHR22891:SF111 | PIWI-LIKE PROTEIN 2 | 109 | 397 | 2.1E-55 |
| 3 | g807.t2 | SUPERFAMILY | SSF101690 | PAZ domain | 219 | 391 | 1.65E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
