General information for g8076.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Diphosphomevalonate decarboxylase.
Parent gene
- The parent gene g8076 is located on chr_2: 28481800..28483005 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8076 | g8076.t2 | TTS | g8076.t2 | 28481389 | 28481389 |
| chr_2 | g8076 | g8076.t2 | isoform | g8076.t2 | 28481621 | 28482329 |
| chr_2 | g8076 | g8076.t2 | exon | g8076.t2.exon1 | 28481621 | 28481716 |
| chr_2 | g8076 | g8076.t2 | cds | g8076.t2.CDS1 | 28481621 | 28481716 |
| chr_2 | g8076 | g8076.t2 | exon | g8076.t2.exon2 | 28481783 | 28482329 |
| chr_2 | g8076 | g8076.t2 | cds | g8076.t2.CDS2 | 28481783 | 28482190 |
| chr_2 | g8076 | g8076.t2 | TSS | g8076.t2 | 28483155 | 28483155 |
Sequences
>g8076.t2 Gene=g8076 Length=643
GCAATGGCAAAAAGGCGTTCAATTAGATGGAAAAGATTCTATTGCAGTGCAAATTGCACC
GGCATCACATTGGCCTGATCTTCATGTATTGATTCTTGTTGTTAATGATAGCAAAAAGAA
GGTTGGGTCGACTTCTGGAATGGCACGAAGTGTTTTGACATCAGAATTAATCAAATATCG
TGTAGAAAAATGTGTTCCTCAGCGAATTCATTCGATAACGCAGGCGATCAAAGATCGTGA
TTTTTCGAAATTTGCTGAAATCACTATGAAGGACAGCAATCAATTTCATGCAATTTGCCT
TGATACTTATCCTCCGTGTGTTTATATGAACGATGTATCTCATGCTATCGTAAATTTTGT
CCACGAATTTAATCGAAATGAAGGAGAAACCAAAGTGGCTTATACTTTTGATGCAGGCCC
AAATGCTTGTTTATATCTGCCAGAGAAATACGTTAAACGTGTTCTCGCTTTCTTTAATCA
CGTGCTGCCAAATGATAATCAAAATTCAGTTGAATATTTGCGTGGCACTCCTGTTGACAT
AGATGAGGAAACTGAATTTAGTCAATATACTCCATATGAAAGAAATGCTTTGAAATATAT
AATTCATACAAAAGTTGGTGATGGACCTTCTATTGTTGATTAG
>g8076.t2 Gene=g8076 Length=167
MARSVLTSELIKYRVEKCVPQRIHSITQAIKDRDFSKFAEITMKDSNQFHAICLDTYPPC
VYMNDVSHAIVNFVHEFNRNEGETKVAYTFDAGPNACLYLPEKYVKRVLAFFNHVLPNDN
QNSVEYLRGTPVDIDEETEFSQYTPYERNALKYIIHTKVGDGPSIVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8076.t2 | Gene3D | G3DSA:3.30.70.890 | - | 1 | 166 | 0 |
| 2 | g8076.t2 | PANTHER | PTHR10977:SF3 | DIPHOSPHOMEVALONATE DECARBOXYLASE | 1 | 167 | 0 |
| 3 | g8076.t2 | PANTHER | PTHR10977 | DIPHOSPHOMEVALONATE DECARBOXYLASE | 1 | 167 | 0 |
| 1 | g8076.t2 | Pfam | PF18376 | Mevalonate 5-diphosphate decarboxylase C-terminal domain | 1 | 166 | 0 |
| 4 | g8076.t2 | SUPERFAMILY | SSF55060 | GHMP Kinase, C-terminal domain | 1 | 165 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
