Gene loci information

Transcript annotation

  • This transcript has been annotated as Ceramide glucosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8077 g8077.t5 isoform g8077.t5 28487533 28488889
chr_2 g8077 g8077.t5 exon g8077.t5.exon1 28487533 28488316
chr_2 g8077 g8077.t5 cds g8077.t5.CDS1 28487613 28488316
chr_2 g8077 g8077.t5 exon g8077.t5.exon2 28488521 28488653
chr_2 g8077 g8077.t5 cds g8077.t5.CDS2 28488521 28488653
chr_2 g8077 g8077.t5 exon g8077.t5.exon3 28488710 28488889
chr_2 g8077 g8077.t5 cds g8077.t5.CDS3 28488710 28488889
chr_2 g8077 g8077.t5 TTS g8077.t5 28489613 28489613
chr_2 g8077 g8077.t5 TSS g8077.t5 NA NA

Sequences

>g8077.t5 Gene=g8077 Length=1097
GAAAAATTAAATTGCACAAGAAACCATGTCTACTGCCACGGGAATCGCCACTTCCATCAG
TCTCAATTCTAAAGCCTTTAATGGGCATCGATCCGAATTTGTCTGCAAATTTAGAAACAT
TTTTTACTATGCAATATCCATCCTATGAGCTGTTATTTTGTATAGAAGATAAGGAAGATC
CTGCTGTGGCAGTAGTTAATAATTTAATAGATAAATATCCAAAAGTAGATGCTTATCTGT
TTCTTGGTGGATCAAAAGTCGGTGTTAATCCGAAAATCAACAATTTGAATGCAGGTTACG
AAAAGGCAAAATATGAACTTATTATGATTTCCGATAGTGGTATTCGTATGAAAGAAGACA
CCTTGCTTGACATGGTGCAACATATGAAAGAAGGAATAGCTCTCGTTCATCAAATGCCTT
TCACATGTGATCGTGAAGGATTTGCTGCAACTTTTGAGAAAATATACTTTGGAACATACC
AATCAAGAATGTATCTCACGGCTGATCTCCTTGGTGCCATTTGTCATACTGGAATGTCAT
CACTCATTCGTCGCGATGTTTTAGATGAACTTGGTGGTTTAAGAGCTTTTGGCTGTTATC
TAGCAGAAGATTTCTTCCTTGCAAAAGCTATAGCTGAAGCAGGATACAAGTCAGCAATCA
GTAGTCAACCTGCGTGGCAAAACTCAGGCATTTGCGATATTACCAACTTTCAATTACGGC
TCACGCGATGGGCAAAATTACGGGTTGCAATGGTGCCGCATTTAATAATTCTTGAACCAC
TTAGTGAATGTATGGTACTAGGATGTTTAGCTTCATGGGCAGTAAATGTGTTGTTTCAGT
GGGACGCCCTTCCATTTTATTTAGTACATATCTTAGTATGGTTCCTCTCCGATTGGATCA
TGCTATCCGTAGTACAGAATGGACCATTGCCGTTTAACAAATTTAATTTTGTTGTCGGAT
GGCTGTTTCGAGAGTTTACTGGACCATATCTATTTCTTTGTGCATTATTTAATCCAGCAA
TAAGATGGCGTGAAAGGACATTCAAACTTCATTGGGGAGGGATCGCTTATGAGACGAAAT
CGAGAATAAAATCATAG

>g8077.t5 Gene=g8077 Length=338
MGIDPNLSANLETFFTMQYPSYELLFCIEDKEDPAVAVVNNLIDKYPKVDAYLFLGGSKV
GVNPKINNLNAGYEKAKYELIMISDSGIRMKEDTLLDMVQHMKEGIALVHQMPFTCDREG
FAATFEKIYFGTYQSRMYLTADLLGAICHTGMSSLIRRDVLDELGGLRAFGCYLAEDFFL
AKAIAEAGYKSAISSQPAWQNSGICDITNFQLRLTRWAKLRVAMVPHLIILEPLSECMVL
GCLASWAVNVLFQWDALPFYLVHILVWFLSDWIMLSVVQNGPLPFNKFNFVVGWLFREFT
GPYLFLCALFNPAIRWRERTFKLHWGGIAYETKSRIKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g8077.t5 CDD cd02520 Glucosylceramide_synthase 1 221 5.68157E-84
8 g8077.t5 Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 7 200 1.2E-14
2 g8077.t5 PANTHER PTHR12726 CERAMIDE GLUCOSYLTRANSFERASE 2 329 2.3E-114
3 g8077.t5 PANTHER PTHR12726:SF1 CERAMIDE GLUCOSYLTRANSFERASE 1-RELATED 2 329 2.3E-114
1 g8077.t5 Pfam PF13506 Glycosyl transferase family 21 47 219 5.0E-52
12 g8077.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 232 -
15 g8077.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 233 252 -
9 g8077.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 253 258 -
14 g8077.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 259 278 -
11 g8077.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 279 289 -
13 g8077.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 290 314 -
10 g8077.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 315 338 -
7 g8077.t5 SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases 6 217 2.06E-20
6 g8077.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 229 251 -
5 g8077.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 256 275 -
4 g8077.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 290 312 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016757 glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values