General information for g8087.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proteasome subunit beta type-7.
Parent gene
- The parent gene g8087 is located on chr_2: 28534763..28535526 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8087 | g8087.t5 | TSS | g8087.t5 | 28534491 | 28534491 |
| chr_2 | g8087 | g8087.t5 | isoform | g8087.t5 | 28534763 | 28535526 |
| chr_2 | g8087 | g8087.t5 | exon | g8087.t5.exon1 | 28534763 | 28535526 |
| chr_2 | g8087 | g8087.t5 | cds | g8087.t5.CDS1 | 28534939 | 28535526 |
| chr_2 | g8087 | g8087.t5 | TTS | g8087.t5 | 28535595 | 28535595 |
Sequences
>g8087.t5 Gene=g8087 Length=764
GAAATGAAAAACTCATTCATGATGGATTTAAACCACCTAAAGCTACTAAAACAGGAACCA
CTATTGTTGGAATTATCTATAAACATGGAGTAATTTTGGGTGCTGATACTAGAGCAACAA
GCGGAAATATTGTGAGCGATAAAAATTGCGAGAAAATTCACTTCTTGGCAAAAAATATGT
ACTGCTGTGGAGCTGGAACAGCAGCTGATACTGAAATGACAACAAAAATGATTGCAAGTC
AACTTGAATTGCATCGATTAAACACTAATCGTGTAGTTCCTGTTCCTTGTGCTTCAACTT
TGTTGAAGCAATATTTATTTCGCTATCAGGGTCATGTAAGTGCTGCTCTTGTTCTTGGTG
GTGTTGATAATCAAGGACCTCATATCTATTGCATCTATCCACACGGATCAACTGATAAAC
TTCCATATGCTACAATGGGCTCAGGTTCTTTAGCCGCTATGTCGGTATTTGAGTCGCGTT
GGAAACCAGATATGGAAGAAGAGGAAGGCAAGAAACTTGTTCGTGATGCAATTGCTGCTG
GTATTTTCAATGACCTTGGATCAGGTTCTAATGTAGACCTGTGTATTATCCGAAAAGATT
CCACTCAATATTTACGCAATTATGAATTGGCTAATGAGAAAGGTGTTAGAAATTTGGATT
ATACATATAAGCGAGGTACGACTGGCGTTTTGTCAGTTAAGAAAATTGCATTCGATGTAG
TAGAAGAATCAACATCCGGCATTGAAAAAATGGACACAAATTAA
>g8087.t5 Gene=g8087 Length=195
MYCCGAGTAADTEMTTKMIASQLELHRLNTNRVVPVPCASTLLKQYLFRYQGHVSAALVL
GGVDNQGPHIYCIYPHGSTDKLPYATMGSGSLAAMSVFESRWKPDMEEEEGKKLVRDAIA
AGIFNDLGSGSNVDLCIIRKDSTQYLRNYELANEKGVRNLDYTYKRGTTGVLSVKKIAFD
VVEESTSGIEKMDTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8087.t5 | CDD | cd03763 | proteasome_beta_type_7 | 1 | 149 | 0.000 |
| 6 | g8087.t5 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 1 | 195 | 0.000 |
| 3 | g8087.t5 | PANTHER | PTHR11599:SF42 | PROTEASOME SUBUNIT BETA TYPE-7 | 1 | 184 | 0.000 |
| 4 | g8087.t5 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 1 | 184 | 0.000 |
| 1 | g8087.t5 | Pfam | PF00227 | Proteasome subunit | 1 | 138 | 0.000 |
| 2 | g8087.t5 | Pfam | PF12465 | Proteasome beta subunits C terminal | 152 | 186 | 0.000 |
| 7 | g8087.t5 | ProSiteProfiles | PS51476 | Proteasome beta-type subunit profile. | 1 | 138 | 34.133 |
| 5 | g8087.t5 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 1 | 171 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
