Gene loci information

Transcript annotation

  • This transcript has been annotated as Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8096 g8096.t1 TSS g8096.t1 28556967 28556967
chr_2 g8096 g8096.t1 isoform g8096.t1 28557057 28563370
chr_2 g8096 g8096.t1 exon g8096.t1.exon1 28557057 28557155
chr_2 g8096 g8096.t1 cds g8096.t1.CDS1 28557057 28557155
chr_2 g8096 g8096.t1 exon g8096.t1.exon2 28557243 28557441
chr_2 g8096 g8096.t1 cds g8096.t1.CDS2 28557243 28557441
chr_2 g8096 g8096.t1 exon g8096.t1.exon3 28557507 28557734
chr_2 g8096 g8096.t1 cds g8096.t1.CDS3 28557507 28557734
chr_2 g8096 g8096.t1 exon g8096.t1.exon4 28557800 28558040
chr_2 g8096 g8096.t1 cds g8096.t1.CDS4 28557800 28558040
chr_2 g8096 g8096.t1 exon g8096.t1.exon5 28558698 28560110
chr_2 g8096 g8096.t1 cds g8096.t1.CDS5 28558698 28560110
chr_2 g8096 g8096.t1 exon g8096.t1.exon6 28560178 28562573
chr_2 g8096 g8096.t1 cds g8096.t1.CDS6 28560178 28562573
chr_2 g8096 g8096.t1 exon g8096.t1.exon7 28562635 28562834
chr_2 g8096 g8096.t1 cds g8096.t1.CDS7 28562635 28562834
chr_2 g8096 g8096.t1 exon g8096.t1.exon8 28562894 28563370
chr_2 g8096 g8096.t1 cds g8096.t1.CDS8 28562894 28563370
chr_2 g8096 g8096.t1 TTS g8096.t1 28563599 28563599

Sequences

>g8096.t1 Gene=g8096 Length=5253
ATGAGTATTCCAGGCAATGGGATCTTTGTGGTCCGTGGTGAGTTGTCCACAATTATGACT
GCAATGAGACGAACATCAAGAAATTCGTGGAACTATCAATATGATAATTCTGATAGTCTT
ACAAAGTCTTTTAATGAGTTAAAAGAGTCTGTGTTGAATATTGAAGATCTAAAGTTGCTG
TCACCAGAAACATTTATGTCTCCATTTCTTGAGGCAATTCGATCAGAAGAGACAACAGGA
GCTGTTACCAGCATTGCATTATCAGCAGTCAATAAATTTCTTTCATATGGACTGATCGAT
CCAACAAATTCAAATCTACCAAATATCGTACAAAATATCGCAGATGCAGTCACACATGCA
CGATTTGTTGGCAGTGACAACAATTCGGATGGAGTTGTATTATTGAAAATAGTTCAAGTT
TTAAGAACTTTAATGTTGAGTCCAGAAGGAAGTGCATTATCGAACGAAAGCGTATGCGAA
ATTATTTTAAGTTGCTTCAGAATATGTTTTGAAACAAGATTAAATGAATTGCTAAGAAGA
ACAGCTGAACAAGCATTGAGAGATATGATTCTTTTACTCTTCATGCGACTTCCACAATTT
GTTGAAGATTTAAATACCTTCAATATAAAGCATTTGAAAATTCGACCAGAAGCAACAGCG
AAAAATTCAGGAAAGGCAAAATCATTAAATGATTTGAATGAAAAATCTAGTTCAACAAAA
TTAGAAACAGTTGAAACTAATAATGATGAAATTAAGTTACAAGACACCTCAAGTGTTACA
CGATTAATAGGGAATGAAGATGCTTATACACCATACGGAATTCCATGCATACGTGAACTT
TTCAGATTTCTTATTTCTCTATGCAATCCATTAGATACACAAAACAATGATAATATCATT
CAAGTCGCATTAAATCTCTTAACAGTTGTCCTTGAGGTTGCATCAGACAATATTGGAAAT
TTCTTTTCACTTATATCACTTGTTAAAGATGAACTTTGCAAGAATTTATTTCAACTACTT
GCATCAGAACGAATACAAATCTTTGCAGCAAATCTACAAGTATGCTTTCTTTTATTCGAA
TCATTGCGATTCCATTTAAAATATCAATTGGAATATTATTTAATCAAATTAACTGATATT
ATTGGAAGTGAAAATGTTCGTGTAACATATGAAATTCGTGAACTTGCGCTAGATAATTTA
CTGCAAATGCTTCGAGTACCAGGTTTTGCAGCAGAACTTTATATAAATTATGATTGTGAC
TTGTATTGTGCCAATATCTTTGAAAATATCACAAAATTGCTATCGAAAAATGCATTGCTC
GCAACAGCTGGACCCACAATTTATGGCACCCATTTATTATCACTTGATGCACTCTTTACA
ATTATTTCATCGATAGACAAAAATTGTATGTCTTTTAAAAAAGGAACACAAATTACAAAT
AAGAGACATTCTAGAAACAATTCTACAGCAAGAGCTGACATGTTTAATGACGAAACAACA
ATTGATGGAGCAGTATATATTAAAAATATGGATACATTCATACAGTATAATACAATGTAT
AATCGTTTTTCTGGAAAATTTAAACCAGGAGAAATTCTTACCGAAGAAAAAATGGATATG
ATTAAAAATAAAAAGAGAATTCTTTCTCAAGGAACTGATTTGTTCAATCAACGACCAGAA
AAGGGTATACAATTTTTGCAAGAAAATGGTTTAATCAATGCAACACTTGATCCACTTGAA
ATTGCACATTTTCTCAGAGAGTCACCTGGACTTGATAAGAAAATGATTGGAGAATATATC
AGCAAAAAAAAGAATGTAGAAAATCGCATTTTGGAAGTTTTTGTTAAATCTTTTGATTTT
ACTTCAATGCGTATAGACAAAGCACTACGATTGTATCTTGAAACATTTCGATTACCAGGT
GAAGCTCCATTAATATTTTTAGTAATGGAGCATTTTGCAGATCATTGGCATAAATGTAAT
AATGAACCGTTTGCAAACACCGATGCAGCTTTCAGACTTGCTTACGCCATTATTATGCTT
AATATGGATCAGCATAATCACAATGCTAAAAAGCTCAACATTCCAATGACAGTTGAAGAT
TTTACAAAAAATTTAAGAGGACTTAATGGAAATTCAGATTTTGATCAAGAAATGCTGATG
GAAATTTTCAATTCTATTAAAAATGAAGAAATCATAATGCCTGCTGAACAAACTGGTATT
GTAAAAGAAAATTATTTATGGAAAGTACTATTGCGAAGAGGTGAAGGTAAAGATGCTGAA
TTTACTCATGTATTGGATTCTAGTTATGACAAGCAGCTATTTCAAGTAACATGGGGATCG
ACTCTTACTGCATTTGGTTCACTATTCGATAAAGTCTCTGAAATTGCAGTTATTAAAAAA
ATAATTGAAGGATTTATGCATTCTGCTGCGATTTGTTCACATTATAGTCTTCATCAAGAG
TTTGATGCCATCATATTAACTCTATGCAAATTCACTACACTTTACAATACAAACGAAACA
AATGAACTTACTATAAGTGTTCAATTTGGTAGTAATTCTAAAGCAAGGACAGCATTGAAA
TCAATTTTTAAATTTCTTCACGATTATGGTGATTCAATGCGAGAAAGTTGGAAACATGTT
ATAGACCTTTTAGTTCAGATGTACAAATTAAAATTATTACCAAAATCATTTGTAGAAATT
GAAGATTTCTGCGAACCCAGTGGTAAACTTTTGTTACAATACGAACCTATTCCTATTCCA
AAATCTGAAGCTAGTTTGTTAAGCAGTCTTTATCTATATCTAAGCTCAGAAAGTCAACGG
CAACCTACACATGAAGAACATGAAATATTAAAAATTGCTAAAAAATGCATAAAAGATTGT
CAAATTGATCAAATGATTATCGAGTCAAAGTTTTTGCATCCTAATTCACTTGCAGAAATA
ATCTCATATCTTGTATCAAACATTAAACCTCCTACAAGTCACAAGTCAGTTGATGGTTCA
TATGAAGAGAATTTAATAGTTTTTTATTTAGAATTTTTAACAAAAATTTTAATACAAAAT
CGAGATCGCGTACTTCCTTTTTGGCAACGCTGTAGTGAAGTTATCCATCAATTAATTGTG
AATGGTGCTTCTTGCGGTTATGCAAATTTATTAAGACGTTCAACAGTTGCATTACTAAAA
TTGGGTATTTATTTAATGAGAAACGAAGAATTAGCTCCAACTATTTTACAAAGCATGAGA
ATATTTTTGCAACTAAAACCAAAGATTTTGCAACATATATCTATTCCTGTGTCAATTGGA
ATGTACGAATTATTGAAAACATCAGCACAAAATATTCACACTGAATGTGATTGGATGATA
GTATTTAAAATTCTTGAGTGTGTTGGAGCTGGTGCAATATCTTCAGAAGCGAATGATTCA
CTTGGAGCTGGTACAAAATCAGATGGAGCATTAAGTAGTGAAGATGAAGCAGAACCATCT
GAACGAGGTTATACTAGTGATTCAGAAATGTTGAAAAATTCTTCACCAGTAACTCCTCAA
TCTATAGGCACTGAAAATAATTGGATCATTGTGAATAAGGAACAAACAAATGATCCGAAA
AGAAACGAGAACTCACAAACAACATCAACTATTGTTTATCCCTGTAAATTAATGCCTCAT
TCTCCTATTGCTTTAGTCAAATGCTGGGACAGTTTAGCATTTATTGTACGAAATGTAGCA
CATATTACACCTTACAATTTTGAAATTTGTGTAAAATGTATCAGAACATTTGTTGAAGCA
TCTATGGTATACGGAAACCCAAAAAAAAATATAAAAAATCAACAAGCTGCAGTTCATGGT
AGGAAAAACATTCCGAGGAAAATTAAAAGTACAGACAATTTGAAAGATGTCGAAAATCAA
ATTAACAATGAAGTTCCAGAAAGATACGAAACAATAGCAATTCAATTATTAGATTTGATG
CATACGCTTTATTCGCGTATTGCTCAAATATTTCGATGGTGGGCTGAAGAAAGTGGATCA
ATGCCACAATGTTCCGCTTTATGGTCACAAGGTTGGTGTCCGTTATTGCAAGGAATTGCA
AGAATATCGACAGACCATCGAAAAGAAGTAAGAACAAGTGCAATTGCATGTTTACAGAGA
GCATTGCTCATGCATGATTTGAAAACACTTAGCGGACCAGAATGGGCTGGCTGTTTTCGA
CAAGTTATATTTCCACTTACAAATTTCTTACTTACTGAAAAAAATCAAAATAGTCAAACA
GAATCAGCTTTGATCGAAGAATCAAGAATTATGTCGAAAGTATTTCTACATCATCTTACG
CCTTTGATGGCGCTTACAAATTTCAATGAATTATGGTTTGAAATAATTCAATATATGGAA
AAGTTCATGAAACTCGGTACTGACATGCTTTATGAAGCCGTTTTGGAGAGCTTAAAAAAT
ATGCTTTTAGTGATGTATTCTGTAAAAGCATTTCATAATCCTGATGGTGTTACTTACTCT
AATTTATGGGAAATGACATGGAATCGAATTGGATTATTTTTGCCAACATTACGTGAAGAG
TTGTTTAAGGATAATGATAATCCAATGCTGAATGTATCAGCAAGAGCAATTCCATCACCA
GTGGTTTCACCTGTGATTGAACAAAAAGAGTTTGCTCCGACTGAAACAATTACAAATTCT
CAAATTTTGACAATTGGAAATAATGACGTATCAGCAATAGTTGATCAATCATCAAGTAAA
GAAGCAACTTCAACAAATGATTCAGAACTTGCACAGAATATTACCGAGCCACAAACAATA
GATACAAATTTATTTTCTAAAATAAATGATGTCGATGAACAGATGGAAAGATTTTCGGAA
ACATCTAGCATAGAATTGATTATTCAAGGAGGTCCAAATGATCAGCAAAATTGTTCTGCT
CCGCCACGTATTCCAGAAAGTCATATGATGAACTTCAATCCTTATCCTGGTGTTAAAAAT
TACAACCACATTCCTGTTGATATTGTGAAAAGTTATACACCTGTTGCTCATCATGACCAG
CAACAAGTAAATCATCCTTCAAGTGAAATTTATGACGAATATGCGACAAATCCTTACAAT
CTTACTCTACAAATAGACAGCAATAATATTGGCGATAATAGCCATAGCAAATTAGTAACG
GGGACTTCAACATTCTTTCAGTCTTCAAACTATTTTAATAACGATTCAAATGAAAACATG
CCACCTGGTTCAGAGCTTTTCAATCGACCATAA

>g8096.t1 Gene=g8096 Length=1750
MSIPGNGIFVVRGELSTIMTAMRRTSRNSWNYQYDNSDSLTKSFNELKESVLNIEDLKLL
SPETFMSPFLEAIRSEETTGAVTSIALSAVNKFLSYGLIDPTNSNLPNIVQNIADAVTHA
RFVGSDNNSDGVVLLKIVQVLRTLMLSPEGSALSNESVCEIILSCFRICFETRLNELLRR
TAEQALRDMILLLFMRLPQFVEDLNTFNIKHLKIRPEATAKNSGKAKSLNDLNEKSSSTK
LETVETNNDEIKLQDTSSVTRLIGNEDAYTPYGIPCIRELFRFLISLCNPLDTQNNDNII
QVALNLLTVVLEVASDNIGNFFSLISLVKDELCKNLFQLLASERIQIFAANLQVCFLLFE
SLRFHLKYQLEYYLIKLTDIIGSENVRVTYEIRELALDNLLQMLRVPGFAAELYINYDCD
LYCANIFENITKLLSKNALLATAGPTIYGTHLLSLDALFTIISSIDKNCMSFKKGTQITN
KRHSRNNSTARADMFNDETTIDGAVYIKNMDTFIQYNTMYNRFSGKFKPGEILTEEKMDM
IKNKKRILSQGTDLFNQRPEKGIQFLQENGLINATLDPLEIAHFLRESPGLDKKMIGEYI
SKKKNVENRILEVFVKSFDFTSMRIDKALRLYLETFRLPGEAPLIFLVMEHFADHWHKCN
NEPFANTDAAFRLAYAIIMLNMDQHNHNAKKLNIPMTVEDFTKNLRGLNGNSDFDQEMLM
EIFNSIKNEEIIMPAEQTGIVKENYLWKVLLRRGEGKDAEFTHVLDSSYDKQLFQVTWGS
TLTAFGSLFDKVSEIAVIKKIIEGFMHSAAICSHYSLHQEFDAIILTLCKFTTLYNTNET
NELTISVQFGSNSKARTALKSIFKFLHDYGDSMRESWKHVIDLLVQMYKLKLLPKSFVEI
EDFCEPSGKLLLQYEPIPIPKSEASLLSSLYLYLSSESQRQPTHEEHEILKIAKKCIKDC
QIDQMIIESKFLHPNSLAEIISYLVSNIKPPTSHKSVDGSYEENLIVFYLEFLTKILIQN
RDRVLPFWQRCSEVIHQLIVNGASCGYANLLRRSTVALLKLGIYLMRNEELAPTILQSMR
IFLQLKPKILQHISIPVSIGMYELLKTSAQNIHTECDWMIVFKILECVGAGAISSEANDS
LGAGTKSDGALSSEDEAEPSERGYTSDSEMLKNSSPVTPQSIGTENNWIIVNKEQTNDPK
RNENSQTTSTIVYPCKLMPHSPIALVKCWDSLAFIVRNVAHITPYNFEICVKCIRTFVEA
SMVYGNPKKNIKNQQAAVHGRKNIPRKIKSTDNLKDVENQINNEVPERYETIAIQLLDLM
HTLYSRIAQIFRWWAEESGSMPQCSALWSQGWCPLLQGIARISTDHRKEVRTSAIACLQR
ALLMHDLKTLSGPEWAGCFRQVIFPLTNFLLTEKNQNSQTESALIEESRIMSKVFLHHLT
PLMALTNFNELWFEIIQYMEKFMKLGTDMLYEAVLESLKNMLLVMYSVKAFHNPDGVTYS
NLWEMTWNRIGLFLPTLREELFKDNDNPMLNVSARAIPSPVVSPVIEQKEFAPTETITNS
QILTIGNNDVSAIVDQSSSKEATSTNDSELAQNITEPQTIDTNLFSKINDVDEQMERFSE
TSSIELIIQGGPNDQQNCSAPPRIPESHMMNFNPYPGVKNYNHIPVDIVKSYTPVAHHDQ
QQVNHPSSEIYDEYATNPYNLTLQIDSNNIGDNSHSKLVTGTSTFFQSSNYFNNDSNENM
PPGSELFNRP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g8096.t1 CDD cd00171 Sec7 544 731 9.95218E-74
8 g8096.t1 Gene3D G3DSA:1.10.220.20 - 531 620 1.3E-26
7 g8096.t1 Gene3D G3DSA:1.10.1000.11 - 621 745 3.1E-41
13 g8096.t1 MobiDBLite mobidb-lite consensus disorder prediction 1144 1177 -
12 g8096.t1 MobiDBLite mobidb-lite consensus disorder prediction 1151 1165 -
11 g8096.t1 MobiDBLite mobidb-lite consensus disorder prediction 1576 1595 -
3 g8096.t1 PANTHER PTHR10663:SF316 GOLGI-SPECIFIC BREFELDIN A-RESISTANCE GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 10 1539 0.0
4 g8096.t1 PANTHER PTHR10663 GUANYL-NUCLEOTIDE EXCHANGE FACTOR 10 1539 0.0
2 g8096.t1 Pfam PF12783 Guanine nucleotide exchange factor in Golgi transport N-terminal 276 426 1.4E-20
1 g8096.t1 Pfam PF01369 Sec7 domain 544 731 4.2E-66
14 g8096.t1 ProSiteProfiles PS50190 SEC7 domain profile. 537 729 38.392
10 g8096.t1 SMART SM00222 sec7_5 541 731 2.2E-77
5 g8096.t1 SUPERFAMILY SSF48371 ARM repeat 65 437 1.96E-5
6 g8096.t1 SUPERFAMILY SSF48425 Sec7 domain 541 739 1.22E-67

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0032012 regulation of ARF protein signal transduction BP
GO:0005085 guanyl-nucleotide exchange factor activity MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values