General information for g8096.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.
Parent gene
- The parent gene g8096 is located on chr_2: 28563370..28572173 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8096 | g8096.t3 | TSS | g8096.t3 | 28556967 | 28556967 |
| chr_2 | g8096 | g8096.t3 | isoform | g8096.t3 | 28557057 | 28558040 |
| chr_2 | g8096 | g8096.t3 | exon | g8096.t3.exon1 | 28557057 | 28557155 |
| chr_2 | g8096 | g8096.t3 | cds | g8096.t3.CDS1 | 28557057 | 28557155 |
| chr_2 | g8096 | g8096.t3 | exon | g8096.t3.exon2 | 28557243 | 28557441 |
| chr_2 | g8096 | g8096.t3 | cds | g8096.t3.CDS2 | 28557243 | 28557441 |
| chr_2 | g8096 | g8096.t3 | exon | g8096.t3.exon3 | 28557507 | 28557734 |
| chr_2 | g8096 | g8096.t3 | cds | g8096.t3.CDS3 | 28557507 | 28557734 |
| chr_2 | g8096 | g8096.t3 | exon | g8096.t3.exon4 | 28557800 | 28558040 |
| chr_2 | g8096 | g8096.t3 | cds | g8096.t3.CDS4 | 28557800 | 28558038 |
| chr_2 | g8096 | g8096.t3 | TTS | g8096.t3 | NA | NA |
Sequences
>g8096.t3 Gene=g8096 Length=767
ATGAGTATTCCAGGCAATGGGATCTTTGTGGTCCGTGGTGAGTTGTCCACAATTATGACT
GCAATGAGACGAACATCAAGAAATTCGTGGAACTATCAATATGATAATTCTGATAGTCTT
ACAAAGTCTTTTAATGAGTTAAAAGAGTCTGTGTTGAATATTGAAGATCTAAAGTTGCTG
TCACCAGAAACATTTATGTCTCCATTTCTTGAGGCAATTCGATCAGAAGAGACAACAGGA
GCTGTTACCAGCATTGCATTATCAGCAGTCAATAAATTTCTTTCATATGGACTGATCGAT
CCAACAAATTCAAATCTACCAAATATCGTACAAAATATCGCAGATGCAGTCACACATGCA
CGATTTGTTGGCAGTGACAACAATTCGGATGGAGTTGTATTATTGAAAATAGTTCAAGTT
TTAAGAACTTTAATGTTGAGTCCAGAAGGAAGTGCATTATCGAACGAAAGCGTATGCGAA
ATTATTTTAAGTTGCTTCAGAATATGTTTTGAAACAAGATTAAATGAATTGCTAAGAAGA
ACAGCTGAACAAGCATTGAGAGATATGATTCTTTTACTCTTCATGCGACTTCCACAATTT
GTTGAAGATTTAAATACCTTCAATATAAAGCATTTGAAAATTCGACCAGAAGCAACAGCG
AAAAATTCAGGAAAGGCAAAATCATTAAATGATTTGAATGAAAAATCTAGTTCAACAAAA
TTAGAAACAGTTGAAACTAATAATGATGAAATTAAGTTACAAGACAC
>g8096.t3 Gene=g8096 Length=255
MSIPGNGIFVVRGELSTIMTAMRRTSRNSWNYQYDNSDSLTKSFNELKESVLNIEDLKLL
SPETFMSPFLEAIRSEETTGAVTSIALSAVNKFLSYGLIDPTNSNLPNIVQNIADAVTHA
RFVGSDNNSDGVVLLKIVQVLRTLMLSPEGSALSNESVCEIILSCFRICFETRLNELLRR
TAEQALRDMILLLFMRLPQFVEDLNTFNIKHLKIRPEATAKNSGKAKSLNDLNEKSSSTK
LETVETNNDEIKLQD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8096.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 255 | - |
| 5 | g8096.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 244 | - |
| 2 | g8096.t3 | PANTHER | PTHR10663:SF316 | GOLGI-SPECIFIC BREFELDIN A-RESISTANCE GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 | 10 | 226 | 5.2E-63 |
| 3 | g8096.t3 | PANTHER | PTHR10663 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 10 | 226 | 5.2E-63 |
| 1 | g8096.t3 | Pfam | PF16213 | Dimerisation and cyclophilin-binding domain of Mon2 | 35 | 197 | 2.4E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed