General information for g8096.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.
Parent gene
- The parent gene g8096 is located on chr_2: 28563370..28572173 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8096 | g8096.t4 | TSS | g8096.t4 | 28556967 | 28556967 |
| chr_2 | g8096 | g8096.t4 | isoform | g8096.t4 | 28557057 | 28558698 |
| chr_2 | g8096 | g8096.t4 | exon | g8096.t4.exon1 | 28557057 | 28557155 |
| chr_2 | g8096 | g8096.t4 | cds | g8096.t4.CDS1 | 28557057 | 28557155 |
| chr_2 | g8096 | g8096.t4 | exon | g8096.t4.exon2 | 28557243 | 28557441 |
| chr_2 | g8096 | g8096.t4 | cds | g8096.t4.CDS2 | 28557243 | 28557441 |
| chr_2 | g8096 | g8096.t4 | exon | g8096.t4.exon3 | 28557507 | 28557734 |
| chr_2 | g8096 | g8096.t4 | cds | g8096.t4.CDS3 | 28557507 | 28557734 |
| chr_2 | g8096 | g8096.t4 | exon | g8096.t4.exon4 | 28557800 | 28558044 |
| chr_2 | g8096 | g8096.t4 | cds | g8096.t4.CDS4 | 28557800 | 28558044 |
| chr_2 | g8096 | g8096.t4 | exon | g8096.t4.exon5 | 28558547 | 28558698 |
| chr_2 | g8096 | g8096.t4 | cds | g8096.t4.CDS5 | 28558547 | 28558654 |
| chr_2 | g8096 | g8096.t4 | TTS | g8096.t4 | NA | NA |
Sequences
>g8096.t4 Gene=g8096 Length=923
ATGAGTATTCCAGGCAATGGGATCTTTGTGGTCCGTGGTGAGTTGTCCACAATTATGACT
GCAATGAGACGAACATCAAGAAATTCGTGGAACTATCAATATGATAATTCTGATAGTCTT
ACAAAGTCTTTTAATGAGTTAAAAGAGTCTGTGTTGAATATTGAAGATCTAAAGTTGCTG
TCACCAGAAACATTTATGTCTCCATTTCTTGAGGCAATTCGATCAGAAGAGACAACAGGA
GCTGTTACCAGCATTGCATTATCAGCAGTCAATAAATTTCTTTCATATGGACTGATCGAT
CCAACAAATTCAAATCTACCAAATATCGTACAAAATATCGCAGATGCAGTCACACATGCA
CGATTTGTTGGCAGTGACAACAATTCGGATGGAGTTGTATTATTGAAAATAGTTCAAGTT
TTAAGAACTTTAATGTTGAGTCCAGAAGGAAGTGCATTATCGAACGAAAGCGTATGCGAA
ATTATTTTAAGTTGCTTCAGAATATGTTTTGAAACAAGATTAAATGAATTGCTAAGAAGA
ACAGCTGAACAAGCATTGAGAGATATGATTCTTTTACTCTTCATGCGACTTCCACAATTT
GTTGAAGATTTAAATACCTTCAATATAAAGCATTTGAAAATTCGACCAGAAGCAACAGCG
AAAAATTCAGGAAAGGCAAAATCATTAAATGATTTGAATGAAAAATCTAGTTCAACAAAA
TTAGAAACAGTTGAAACTAATAATGATGAAATTAAGTTACAAGACACGTCANAGAAACGC
CAGACACCACTGTTGAACAAGAAAATGTCACTCTACAAAATGAACACAATGAAAATCAAT
CAGAAACATCTTCGTCTCAACAAGAAAATCAACAAATAGCTAATTTGGATAATTCAAAAG
ATGATACTAACAATTCATCTAGC
>g8096.t4 Gene=g8096 Length=292
MSIPGNGIFVVRGELSTIMTAMRRTSRNSWNYQYDNSDSLTKSFNELKESVLNIEDLKLL
SPETFMSPFLEAIRSEETTGAVTSIALSAVNKFLSYGLIDPTNSNLPNIVQNIADAVTHA
RFVGSDNNSDGVVLLKIVQVLRTLMLSPEGSALSNESVCEIILSCFRICFETRLNELLRR
TAEQALRDMILLLFMRLPQFVEDLNTFNIKHLKIRPEATAKNSGKAKSLNDLNEKSSSTK
LETVETNNDEIKLQDTSXKRQTPLLNKKMSLYKMNTMKINQKHLRLNKKINK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g8096.t4 | PANTHER | PTHR10663:SF316 | GOLGI-SPECIFIC BREFELDIN A-RESISTANCE GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 | 10 | 248 | 0 |
| g8096.t4 | PANTHER | PTHR10663 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 10 | 248 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
