General information for g8101.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative NSFL1 cofactor p47.
Parent gene
- The parent gene g8101 is located on chr_2: 28571091..28572329 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8101 | g8101.t4 | isoform | g8101.t4 | 28571091 | 28572329 |
| chr_2 | g8101 | g8101.t4 | exon | g8101.t4.exon1 | 28571091 | 28571181 |
| chr_2 | g8101 | g8101.t4 | cds | g8101.t4.CDS1 | 28571180 | 28571181 |
| chr_2 | g8101 | g8101.t4 | exon | g8101.t4.exon2 | 28571387 | 28572329 |
| chr_2 | g8101 | g8101.t4 | cds | g8101.t4.CDS2 | 28571387 | 28572017 |
| chr_2 | g8101 | g8101.t4 | TTS | g8101.t4 | 28572063 | 28572063 |
| chr_2 | g8101 | g8101.t4 | TSS | g8101.t4 | 28572415 | 28572415 |
Sequences
>g8101.t4 Gene=g8101 Length=1034
ATGGCAGATAACGAAGCATTAATAGCGCAATTTATGGATATTACTGGAGCTACTAGAGAA
CGAGCAGAATTTTTCTTGCAGGCCTCAAATTTTGAAGTCGATGTAAATTTTTCTGTTTAT
AAAATTTTTTGATTACTCATTGTCACTCATTTTTAGCTGGCTGTAACTAATTTTTATGAA
AATGGACCGGATCAAGGTGTAAATGTCGATCAAGCAATAATTGACTCAAATAGTTCTGAT
GAAGAAGAAAATATCAAGGTGGCAACCAAAAAAGAAAATAAAAGTTCAACCGGTTTCAGC
AATATTGCGACTATGTCATCAGTAAGGAATCAAGAAGATAAAGATGACGAAAAAGGGCAA
GCGTACTATGCTGGTGGATCTGAGCATTCAGGTCAACAAGTTCTCGGTCCACCACGTAAA
AATCCAATAAAAGATGTGATCTCTCAAGTTTTTCAAAAAGCTCAATCGGGTAATATAGAG
CAATTCGATCCTGATGATGATGATGATGATGACGAATCTCCAAATTCACGTCCTACATTT
AGTGGAACTGGTTATCGTTTAGGGCACACTGACAATGACACTCAAACTGTTGCATCATCT
TCATCTAGTGGTCGTAAAAAACATGAGCATGACACAGTAACTGTAAAAGTTTATAGTCAA
GGCTTCACAGTCGATGATGGTGATTTGCGTTCTTATGAAGAACCTCAAAATAGAGAATTT
TTTGAGAGTATCACTCGAAATGAAATTCCAGCTGAATTGAGAAAGCAGGGTAAATCTATG
GTTCATGTAAATGTGGAAAATCATATGGGTGAGGAATATGTTAAAAAAGCACCGAAATTT
AAGGCTTTTACTGGTTCAGGTCATACACTTGGTTCACCAACTCCTCTCACTACTGAAGAC
GCAACAGTACCAAATGTAACAACTAGCAGTGATGGAAAGTTATAACTTTTCCAAATAAGG
AACTTGCAAATTCAAGCGACTCAATTCAACAAGCTGGTTTACAAAATGCTGCAATCATGC
AACGAATGAAGTAA
>g8101.t4 Gene=g8101 Length=210
MSSVRNQEDKDDEKGQAYYAGGSEHSGQQVLGPPRKNPIKDVISQVFQKAQSGNIEQFDP
DDDDDDDESPNSRPTFSGTGYRLGHTDNDTQTVASSSSSGRKKHEHDTVTVKVYSQGFTV
DDGDLRSYEEPQNREFFESITRNEIPAELRKQGKSMVHVNVENHMGEEYVKKAPKFKAFT
GSGHTLGSPTPLTTEDATVPNVTTSSDGKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g8101.t4 | Gene3D | G3DSA:3.30.420.210 | - | 106 | 168 | 4.0E-21 |
| 9 | g8101.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 108 | - |
| 10 | g8101.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - |
| 7 | g8101.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 98 | - |
| 8 | g8101.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 210 | - |
| 6 | g8101.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 210 | - |
| 2 | g8101.t4 | PANTHER | PTHR23333:SF20 | GH01724P | 6 | 197 | 5.6E-45 |
| 3 | g8101.t4 | PANTHER | PTHR23333 | UBX DOMAIN CONTAINING PROTEIN | 6 | 197 | 5.6E-45 |
| 1 | g8101.t4 | Pfam | PF08059 | SEP domain | 111 | 184 | 5.6E-22 |
| 12 | g8101.t4 | ProSiteProfiles | PS51399 | SEP domain profile. | 106 | 170 | 29.226 |
| 5 | g8101.t4 | SMART | SM00553 | faf_3 | 103 | 196 | 6.4E-29 |
| 4 | g8101.t4 | SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 100 | 191 | 5.75E-28 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
