General information for g8111.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucose 4-epimerase.
Parent gene
- The parent gene g8111 is located on chr_2: 28627539..28628242 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8111 | g8111.t3 | TTS | g8111.t3 | 28625930 | 28625930 |
| chr_2 | g8111 | g8111.t3 | isoform | g8111.t3 | 28626116 | 28628242 |
| chr_2 | g8111 | g8111.t3 | exon | g8111.t3.exon1 | 28626116 | 28626649 |
| chr_2 | g8111 | g8111.t3 | cds | g8111.t3.CDS1 | 28626116 | 28626649 |
| chr_2 | g8111 | g8111.t3 | exon | g8111.t3.exon2 | 28627875 | 28628142 |
| chr_2 | g8111 | g8111.t3 | cds | g8111.t3.CDS2 | 28627875 | 28628114 |
| chr_2 | g8111 | g8111.t3 | exon | g8111.t3.exon3 | 28628211 | 28628242 |
| chr_2 | g8111 | g8111.t3 | TSS | g8111.t3 | 28628234 | 28628234 |
Sequences
>g8111.t3 Gene=g8111 Length=834
GACTCATCAGTCTACTTTGTGTATTCAACCAAATTCTTAAGTTTCAAGCATTTTCTAATT
ATGCTGTCAACAATATTAACAACAGGAGGTGCAGGATTCATTGGAAGCCACACAGTTTTA
GAGCTTCTTAATGCTGGTCATAATGTAATTTGCATTGATAATGAATGCAATGCTTATCAT
GAAAAAAATGAATTGCTGCCAGAATCATTAAAAAGAGTAGAAGAAATAACTGGAAAGAAT
GTCACTTATTATAATGTGGATATACGAGATAAAAACGCTCTAAGTTCGGTTTTTAAAAAG
CGCTGGAATGTTATCTCATTGAGATATTTTAATCCTGTTGGAGCTCATAAATCAGGAAAA
ATCGGAGAAGATCCAAATGGAGAACCTAATAACTTAATGCCATATATTTCGCAAGTTGCT
GTTGGAAAACGAACATTGTTAAGAATTTTTGGTAATGATTATGCTACCGAAGACGGCACA
GGAGTAAGGGATTACATTCATATTGTTGATCTTGCTCAAGGACATCTATCCGCTCTAAAT
AAGTTGATTGAAGGTGGATTGAGAGGATTTGCTGTTTATAATTTGGGAACTGGCAAGGGT
TATTCAGTTTTAGACATGGTAAAAAATTTTTCTACTGCATGCGGAATAGACATTCCATAT
GAATTCACGTCTCGTCGAGATGGAGATATTGCCGCATGTTATGCTAGTACTGAAAAAGCT
GAAAAAGAACTTGGTTGGAAGGCAAAATATGGAATCAAAGAAATGTGTGAAGACACATGG
AGATGGCAGAAAAATAATCCTAATGGATTTGCTGCATTAAAATCCGATCTCTAG
>g8111.t3 Gene=g8111 Length=257
MLSTILTTGGAGFIGSHTVLELLNAGHNVICIDNECNAYHEKNELLPESLKRVEEITGKN
VTYYNVDIRDKNALSSVFKKRWNVISLRYFNPVGAHKSGKIGEDPNGEPNNLMPYISQVA
VGKRTLLRIFGNDYATEDGTGVRDYIHIVDLAQGHLSALNKLIEGGLRGFAVYNLGTGKG
YSVLDMVKNFSTACGIDIPYEFTSRRDGDIAACYASTEKAEKELGWKAKYGIKEMCEDTW
RWQKNNPNGFAALKSDL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g8111.t3 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 86 | 0e+00 |
| 13 | g8111.t3 | Gene3D | G3DSA:3.90.25.10 | - | 94 | 149 | 0e+00 |
| 12 | g8111.t3 | Gene3D | G3DSA:3.90.25.10 | - | 150 | 253 | 0e+00 |
| 3 | g8111.t3 | PANTHER | PTHR43725:SF14 | UDP-GLUCOSE 4-EPIMERASE | 3 | 80 | 0e+00 |
| 5 | g8111.t3 | PANTHER | PTHR43725 | UDP-GLUCOSE 4-EPIMERASE | 3 | 80 | 0e+00 |
| 4 | g8111.t3 | PANTHER | PTHR43725:SF14 | UDP-GLUCOSE 4-EPIMERASE | 80 | 251 | 0e+00 |
| 6 | g8111.t3 | PANTHER | PTHR43725 | UDP-GLUCOSE 4-EPIMERASE | 80 | 251 | 0e+00 |
| 7 | g8111.t3 | PRINTS | PR01713 | Nucleotide sugar epimerase signature | 143 | 158 | 4e-07 |
| 8 | g8111.t3 | PRINTS | PR01713 | Nucleotide sugar epimerase signature | 170 | 185 | 4e-07 |
| 9 | g8111.t3 | PRINTS | PR01713 | Nucleotide sugar epimerase signature | 209 | 226 | 4e-07 |
| 1 | g8111.t3 | Pfam | PF16363 | GDP-mannose 4,6 dehydratase | 6 | 80 | 0e+00 |
| 2 | g8111.t3 | Pfam | PF16363 | GDP-mannose 4,6 dehydratase | 83 | 239 | 0e+00 |
| 10 | g8111.t3 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 249 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
