General information for g8112.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8112 is located on chr_2: 28638693..28641568 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8112 | g8112.t4 | TSS | g8112.t4 | 28628590 | 28628590 |
| chr_2 | g8112 | g8112.t4 | isoform | g8112.t4 | 28628724 | 28634290 |
| chr_2 | g8112 | g8112.t4 | exon | g8112.t4.exon1 | 28628724 | 28628730 |
| chr_2 | g8112 | g8112.t4 | exon | g8112.t4.exon2 | 28631217 | 28631527 |
| chr_2 | g8112 | g8112.t4 | exon | g8112.t4.exon3 | 28631608 | 28631689 |
| chr_2 | g8112 | g8112.t4 | exon | g8112.t4.exon4 | 28631903 | 28632291 |
| chr_2 | g8112 | g8112.t4 | cds | g8112.t4.CDS1 | 28632289 | 28632291 |
| chr_2 | g8112 | g8112.t4 | exon | g8112.t4.exon5 | 28632926 | 28633519 |
| chr_2 | g8112 | g8112.t4 | cds | g8112.t4.CDS2 | 28632926 | 28633519 |
| chr_2 | g8112 | g8112.t4 | exon | g8112.t4.exon6 | 28634203 | 28634290 |
| chr_2 | g8112 | g8112.t4 | cds | g8112.t4.CDS3 | 28634203 | 28634289 |
| chr_2 | g8112 | g8112.t4 | TTS | g8112.t4 | NA | NA |
Sequences
>g8112.t4 Gene=g8112 Length=1471
ATGAGCAATTTTGCATGGGTTACATTAGCAACTAATGACAGCTATTCACTTGGTGCTTTA
GTTGTTGCACACTCATTGAAAAGAGTGGAGACAGCTCACAAGTTGGTTGTAGTTATAACA
CCTGGAGTATCAGATGTTATGAGAAGCAAATTACAAGATGTCTTTGATGTTGTACAATTT
GTAAACGTGCTCGATTCAAAAGATGCAGCTAATCTGGCTGTTCTCAAACGTCCAGAATTG
GGAATAACGTTTACAAAATTACATTGCTGGAATCTTACATAATTTGATAAATGTGTATTT
CTTGATGCTGACGTTTTAGTTTTGCAAAATTGCGATGAATTATTCGAGCGAGAAGAGCTT
TCTGCTGCAGCAGATGTTGGCTGGCCAGATTGCTTTAATACTGGCGTTTTTGTATTCAAG
CCAAGTTCTGATACATATGGAAAATTGATTAAATTTGCTGAAAGTGTTGGAAGCTTTGAC
GGAGCTGATCAGGGTTTGTTGAATCAATATTTCTCTAACTGGTCAACTGGCGATTCATCA
AGAAGACTTCCTTTCTTATATAATACCGCATCGACTGCAACATATTCTTACTTGCCTGCA
TTTAAGCATTTTAATAAGGATGTCAAAATTCTTCATTTCATCGGAGATGTAAAACCATGG
GTGCAGCAATTCAATTCAGTTACAAGACAAGTACAAAGCCCAACTGGATATAGTCACCTT
CAAGACTTTTTGCAATTATGGTGGAATATATTTTGCGAAAAAGTACATCCTGTTCTTAGC
GATGCAATGAATATTCCTTGGTTGAGTCGTTTTGAAGATAATTGTGTTCAATATAATTAT
CCATGCGATTATTCGGATCCGCCAGCAACAATAGTTGATGCACATTCAGATAATCATAAT
AACTATAATAGTAATCATAATAATAATAATATAAACGAAGAGGAAAATCAAGTGCGAACA
TATGATCCATATCTCATTGCGTATCATGAAGATAGCAATACGTTTACATACAATGATCCG
TGGGTTGATGATAGAAATAATAGGAATGAAAATAATGAAAATAGTAATAATAATTGTACT
AATAATAATAACAACACAACCATCAACAATCAAATCAACGTGGATAATATTGATTCCACG
TGGACACGGATGCACGAGCATTCGAATGGCTGCAATGATTTGACACATGCATCTGAAATT
ACAACAACGTCACTACCATCAATGACATCAGCTTCAATCCTGCAAAGTAGTTCTGACTTA
ATTAACAATAATACAATTGTTAATGAAAATCAAAGCGTTGAAAATATAAGTCACATAACT
TGCGATAAAGATCATTCGCCATCTTCTATTGTTGAAGCCAATAGTGATAATGTGACAGAT
GAGAGAAAATCGGTTACGGAATCTAATAGTTTGTCTAATATAAAAAATAATGAAAAAATA
TCGGTGAAAGGAAAACCAATTAGTACGAGAA
>g8112.t4 Gene=g8112 Length=228
MNIPWLSRFEDNCVQYNYPCDYSDPPATIVDAHSDNHNNYNSNHNNNNINEEENQVRTYD
PYLIAYHEDSNTFTYNDPWVDDRNNRNENNENSNNNCTNNNNNTTINNQINVDNIDSTWT
RMHEHSNGCNDLTHASEITTTSLPSMTSASILQSSSDLINNNTIVNENQSVENISHITCD
KDHSPSSIVEANSDNVTDERKSVTESNSLSNIKNNEKISVKGKPISTR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8112.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 228 | - |
| 1 | g8112.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 228 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
