General information for g8114.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8114 is located on chr_2: 28645774..28647001 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8114 | g8114.t3 | isoform | g8114.t3 | 28635502 | 28643978 |
| chr_2 | g8114 | g8114.t3 | exon | g8114.t3.exon1 | 28635502 | 28635549 |
| chr_2 | g8114 | g8114.t3 | exon | g8114.t3.exon2 | 28638530 | 28638617 |
| chr_2 | g8114 | g8114.t3 | exon | g8114.t3.exon3 | 28638685 | 28639074 |
| chr_2 | g8114 | g8114.t3 | cds | g8114.t3.CDS1 | 28638721 | 28639074 |
| chr_2 | g8114 | g8114.t3 | exon | g8114.t3.exon4 | 28641540 | 28643978 |
| chr_2 | g8114 | g8114.t3 | cds | g8114.t3.CDS2 | 28641540 | 28641542 |
| chr_2 | g8114 | g8114.t3 | TSS | g8114.t3 | 28644190 | 28644190 |
| chr_2 | g8114 | g8114.t3 | TTS | g8114.t3 | NA | NA |
Sequences
>g8114.t3 Gene=g8114 Length=2965
AAATAAAAGACATGAATGAATATTTTTCTCATTTTTTATTTGTCAAAAATAATAAAATTT
AATAAATCTCTCACATATATGCATGAGTTACAATGTCAGTAAAAATGAAAGCAAATAATA
TTTCATTACTTTATTTTCGTTATATTTTCATCAAACAAAATACTCTTATAAAAAGAATAA
AATTAATTTCAGTAGATTTGATTTTAGAGAAATCTATTTTGCAGAATCTTTTTAGACTTC
AGCACACAAACATAAAGGTCTAAAATATATTTTAATTTTTGGTGTCTTCGAGAAGAAGTT
ATAAGCACATATGCTTAAAAATTATTTACACATAAATGAATGAATATTTTCATAATTTGT
TAATAATTAAATATTTTTTTAAAATTTTTACGCTTTTTCAACTTTTTTTTTTGATGATTA
AATTTTATTAATGTCAAATGTAATATTTTGTGTATGTGTATTTATGAGCGCAGAATATGT
CAGTATTAATTAGTAATTTGAAAAAAATTGTATAGCAAACGCATTTCAGAGATAAAAATT
TATGAAAAGTTAACAACAAATATATAATTGAGTTTTTATCCAAATAATTTGACGCTTTTC
ATCATGTTGTTTTGGACTCCTTGAATTTGCTGTTTCGATTGAACGACACGACGCTTAGTT
TGTCCACTCTCATTAGTTTCTTCCTCTACTGCATCATAAAATTCGCGAGTTTGCACTGAA
GTGGCACCATTTAATTTCTTTGTAGTTGTTGTTTGTCGATATCCATTAGCAATGCGTTCA
ACTACAATAGTTGAGGTTGATCCATCAGCATTTTTCTGAACTTGTGGTCCTTGAGTTGCT
AAAACTGCTAAATTATTACGAATGGCCATAGCTTCTTCGTGATCAACTTTCTCTTCAACG
GCATCATAAAATTCGCGAGTTGCAACTTTAGTTGAACCATCTGGAAAAACTGTTGTTGAA
ATTTCACGATATCCCTTATCGGTTTTTTCACGAACAACAGTGGTTACACCTTCAGCATTG
TCACGCGCCATTAATGCTGCACGCTGTTGCTCTTCAGTGATTTTCCTCGTCGACTTTTTA
GTAATTTTTTTAGTTTCTACTCCATTCTCTTGCATGCTTTCTTGGATTTGATGTACTTGT
TGCATTTGCACTTGATGAACTTGCTCTGCAGTGTCATCTTCTTCAACAACCTCTTCAACT
TGTTTCTTAGAAGACTTTTTCTTAGTTTTTTTAACACTCTTCTCCTCAGTTTCTTCAATG
CTTTCATGATGTTGCTTTATGATAGTTTCCTTAACAGACATGCGAATTGATGATGGTGGA
TGTTCAATAATTTCAGTTGTTTCAACAATCTCTTTCTCTTTTGGATAGAAGATAATTTGA
GTGGTCGATTTATATTGACCATTTGGTAATTTTGTCACTGTAATATCTTTGTGACCTGAA
CCATCAGGGAATGGTTCACGAGATACGGTAACAAGATTGCCATCATCGTCTTCGTAACTC
TCAATTACTTCTTGATTCAAGTTAATAACTTTTTTGACCTTCTTCTTCTTACCAGATTTA
GTCGTAGTAGTCTCTTCGACAACTTGCTGTTCAGATTTTGGAACTTCAACTGGATCGTAA
AAGATTTTAGTCGATTTTCTCGTTGTTCCGTCTGGGAAAGTGATAGTAGTGATTTCTTTG
TAGCCACCATCGAAAGCCTCACGAACAACATCGCTTGAACCCTCAATCTTTTGCTTCTTC
TTCTTTTTCTTTTTCTTACCATCTTTGCCAACTTCAGGCTCTCCATCATCTTCTACTGGT
GGGGGAGGAGGTGGTGCGTTCGCTCTTAATTCAGCCAATTTTTCATCGCTTATCTCTTCT
TCTTCAACATTTTCTTCGACTTCTTCTTCATCTTCTACTATTGGTTTGTAAGTGCGTACC
ATTGTTGTTGTGCGTTTACCAATTTTATCATTAACCCATTCTTTATGAGTTATTATTTGT
TGAAAACCCTCTTCAACGCGTTTGGTTACAATCTTTGTGTTAGTAGCTTCATCAAACTGC
TCAATTTCATCCTCATCGCCGAGTAATTCGGCCAATTCATCATAAGATGATGGTGGTACG
TTAACCATTATTGCTGTTCTTCTTTTGGTTGATCAGCACTAGTAGATTTAATTTCTTCTT
TTACTGTTTCAATAGATACAGTTGTTTGAATAGTTTCTTCTGCTGTTTGCTCTTGTGCTT
TGATATCTTCTTCAATGTGTGCTTTTTCTAAAGGTATTGATTCCTCCTGCTGAATGTTTT
CGTTATCGTCTGTTTTGTTGTATGGTATATGTGTTTGTATAAATATGTAAGAGATTTATG
TTATAATATTTTGTTCAATGAAAAAATCAATATATAAAATGAATTGTCGATGTTTGATTT
AGTATATTTGTTACTTTCGTTTTCTCTTCTCTACCGATGTTACCTCCTTCTTTCTTTTTG
GGTGCTACAGGAGCTGCTGCTGTTGTTGTTGTTGTTGCTGCAATTGATGCAGGTGCGTTT
GAAGTTGTTGTTGGTTTATCTGATACAACAGGTTTGGACGCAACTGGTTTTGTTTGTGCT
GCTGGTACAGTTTCTTGCTTTTTCACTGGAGCAGCTACTTTCACTGGTTCTTCAACAACT
TTAGCGGGTTCAATTGGTGCTGCTGATGCGTCCGATTTTTTTTCTACAGGCTTCGGACTT
GGTTCTCTTTGTGGTGTTTTTGATCGTGAACGTGATCTTCTGCGTTCTTGTTGTTCAACT
ACTTCAGCAGGTGGTGCTTCGATAGTTGTTTGAATTTTCTTCCAAATATTAGCAAAAGAA
TCTTGCCCTAAATAATCGATATGGCCAGATTCCCAATTTGCACGACGGAATTGATCTTCG
TATGCTTGCTGCTCGGCACTACGTTCAGTTCCTAATTTTAATGGATAATATCACTATGAT
AAGTAATTTACCTTAAATTATAAGA
>g8114.t3 Gene=g8114 Length=118
MLPPSFFLGATGAAAVVVVVAAIDAGAFEVVVGLSDTTGLDATGFVCAAGTVSCFFTGAA
TFTGSSTTLAGSIGAADASDFFSTGFGLGSLCGVFDRERDLLRSCCSTTSAGGASIVV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8114.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 6 | g8114.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 7 | g8114.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 17 | - |
| 8 | g8114.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 21 | - |
| 4 | g8114.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 118 | - |
| 3 | g8114.t3 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 27 | - |
| 2 | g8114.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 27 | - |
| 1 | g8114.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 42 | 64 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed