Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative GILT-like protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g812 g812.t12 TTS g812.t12 6154449 6154449
chr_3 g812 g812.t12 isoform g812.t12 6154710 6157649
chr_3 g812 g812.t12 exon g812.t12.exon1 6154710 6154804
chr_3 g812 g812.t12 cds g812.t12.CDS1 6154710 6154804
chr_3 g812 g812.t12 exon g812.t12.exon2 6154949 6155378
chr_3 g812 g812.t12 cds g812.t12.CDS2 6154949 6155378
chr_3 g812 g812.t12 exon g812.t12.exon3 6157593 6157649
chr_3 g812 g812.t12 cds g812.t12.CDS3 6157593 6157649
chr_3 g812 g812.t12 TSS g812.t12 6157730 6157730

Sequences

>g812.t12 Gene=g812 Length=582
ATGATTGCGAAAGTGTTATTTGTTTTGGGAGTTTTAAGTGCCGCATATGCACAAAAGACA
CCAGTTTATGTTTATTATGAATCTCTGTGCCCCGACAGTATGGCATTCATCACGAAACAG
TTATATCCAGCAATGAAAGAATTGAAAGATCATGTCAGTCTTGAGCTCATTCCATTTGGC
AAATCGACATGGAACACACAAGGTTCCGACACAATTTTCAACTGTCATCATGGCCCTGAA
GAATGCTACGGAAATAAAATTCATGCTTGCGCAATCAGTCACATTCAAGTTGATTCATTC
CAAACTGAACACACTCGAGAGACTTTAATTGTTGACTACATCACCTGCTTGATGAGTGGT
GGTTTTCGTGATCAACCATATGCTTTGTATGCAAGAAAATGCGCTGAAGATACTCATGTT
AAGAAATTTGAATCAATTGAACAATGTGCAAACAGCACTGAAGGTTCAAAATTATTGGAA
GAAATGGCAGTTTGTCGAGCACATTCTGGAGCTTCAACTATCTCTGGTGGAATCATTGCA
GGCATTCTTGCCATTATTATTTCTATTTTCCGTTTCATTTAA

>g812.t12 Gene=g812 Length=193
MIAKVLFVLGVLSAAYAQKTPVYVYYESLCPDSMAFITKQLYPAMKELKDHVSLELIPFG
KSTWNTQGSDTIFNCHHGPEECYGNKIHACAISHIQVDSFQTEHTRETLIVDYITCLMSG
GFRDQPYALYARKCAEDTHVKKFESIEQCANSTEGSKLLEEMAVCRAHSGASTISGGIIA
GILAIIISIFRFI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g812.t12 PANTHER PTHR13234:SF59 GAMMA-INTERFERON-INDUCIBLE LYSOSOMAL THIOL REDUCTASE-LIKE PROTEIN 17 162 5.1E-35
4 g812.t12 PANTHER PTHR13234 GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT 17 162 5.1E-35
2 g812.t12 Pfam PF03227 Gamma interferon inducible lysosomal thiol reductase (GILT) 22 137 2.0E-31
9 g812.t12 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
10 g812.t12 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
11 g812.t12 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 12 -
13 g812.t12 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
8 g812.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 173 -
12 g812.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 174 192 -
7 g812.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 193 193 -
6 g812.t12 SignalP_EUK SignalP-noTM SignalP-noTM 1 17 -
1 g812.t12 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 17 -
5 g812.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 190 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed