General information for g812.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GILT-like protein 1.
Parent gene
- The parent gene g812 is located on chr_3: 6154710..6157730 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g812 | g812.t13 | TTS | g812.t13 | 6154449 | 6154449 |
| chr_3 | g812 | g812.t13 | isoform | g812.t13 | 6154710 | 6157649 |
| chr_3 | g812 | g812.t13 | exon | g812.t13.exon1 | 6154710 | 6155378 |
| chr_3 | g812 | g812.t13 | cds | g812.t13.CDS1 | 6154710 | 6155378 |
| chr_3 | g812 | g812.t13 | exon | g812.t13.exon2 | 6157620 | 6157649 |
| chr_3 | g812 | g812.t13 | cds | g812.t13.CDS2 | 6157620 | 6157649 |
| chr_3 | g812 | g812.t13 | TSS | g812.t13 | 6157730 | 6157730 |
Sequences
>g812.t13 Gene=g812 Length=699
ATGATTGCGAAAGTGTTATTTGTTTTGGGAACACCAGTTTATGTTTATTATGAATCTCTG
TGCCCCGACAGTATGGCATTCATCACGAAACAGTTATATCCAGCAATGAAAGAATTGAAA
GATCATGTCAGTCTTGAGCTCATTCCATTTGGCAAATCGACATGGAACACACAAGGTTCC
GACACAATTTTCAACTGTCATCATGGCCCTGAAGAATGCTACGGAAATAAAATTCATGCT
TGCGCAATCAGTCACATTCAAGTTGATTCATTCCAAACTGAACACACTCGAGAGACTTTA
ATTGTTGACTACATCACCTGCTTGATGAGTGGTGGTTTTCGTGATCAACCATATGCTTTG
TATGCAAGAAAATGCGCTGAAGATACTCATGTTAAGAAATTTGAATCAATTGAACAATGT
GCAAACAGCACTGAAGGTTCAAAATTATTGGAAGAAATGGGTGAAAAAACATTCAAGCTC
GAAAATCCTTTGAAATCCGTCCCAACAATTACAATCCGCGAGACTTATGATGCTCAAATT
CAGAAGCAAGCTTTAAATGATTTACCGAGTGCCATTTGTAACAATCTCCCCAAACCTATT
CCAGCAGTTTGTCGAGCACATTCTGGAGCTTCAACTATCTCTGGTGGAATCATTGCAGGC
ATTCTTGCCATTATTATTTCTATTTTCCGTTTCATTTAA
>g812.t13 Gene=g812 Length=232
MIAKVLFVLGTPVYVYYESLCPDSMAFITKQLYPAMKELKDHVSLELIPFGKSTWNTQGS
DTIFNCHHGPEECYGNKIHACAISHIQVDSFQTEHTRETLIVDYITCLMSGGFRDQPYAL
YARKCAEDTHVKKFESIEQCANSTEGSKLLEEMGEKTFKLENPLKSVPTITIRETYDAQI
QKQALNDLPSAICNNLPKPIPAVCRAHSGASTISGGIIAGILAIIISIFRFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g812.t13 | PANTHER | PTHR13234:SF59 | GAMMA-INTERFERON-INDUCIBLE LYSOSOMAL THIOL REDUCTASE-LIKE PROTEIN | 13 | 204 | 2.3E-47 |
| 3 | g812.t13 | PANTHER | PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT | 13 | 204 | 2.3E-47 |
| 1 | g812.t13 | Pfam | PF03227 | Gamma interferon inducible lysosomal thiol reductase (GILT) | 13 | 128 | 4.3E-31 |
| 6 | g812.t13 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 212 | - |
| 7 | g812.t13 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 213 | 231 | - |
| 5 | g812.t13 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 232 | 232 | - |
| 4 | g812.t13 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 209 | 231 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed