Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative GILT-like protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g812 g812.t4 isoform g812.t4 6154443 6157649
chr_3 g812 g812.t4 exon g812.t4.exon1 6154443 6155371
chr_3 g812 g812.t4 TTS g812.t4 6154449 6154449
chr_3 g812 g812.t4 cds g812.t4.CDS1 6154710 6155336
chr_3 g812 g812.t4 exon g812.t4.exon2 6157593 6157649
chr_3 g812 g812.t4 TSS g812.t4 6157730 6157730

Sequences

>g812.t4 Gene=g812 Length=986
ATGATTGCGAAAGTGTTATTTGTTTTGGGAGTTTTAAGTGCCGCATATGCACAAAAGTTT
ATGTTTATTATGAATCTCTGTGCCCCGACAGTATGGCATTCATCACGAAACAGTTATATC
CAGCAATGAAAGAATTGAAAGATCATGTCAGTCTTGAGCTCATTCCATTTGGCAAATCGA
CATGGAACACACAAGGTTCCGACACAATTTTCAACTGTCATCATGGCCCTGAAGAATGCT
ACGGAAATAAAATTCATGCTTGCGCAATCAGTCACATTCAAGTTGATTCATTCCAAACTG
AACACACTCGAGAGACTTTAATTGTTGACTACATCACCTGCTTGATGAGTGGTGGTTTTC
GTGATCAACCATATGCTTTGTATGCAAGAAAATGCGCTGAAGATACTCATGTTAAGAAAT
TTGAATCAATTGAACAATGTGCAAACAGCACTGAAGGTTCAAAATTATTGGAAGAAATGG
GTGAAAAAACATTCAAGCTCGAAAATCCTTTGAAATCCGTCCCAACAATTACAATCCGCG
AGACTTATGATGCTCAAATTCAGAAGCAAGCTTTAAATGATTTACCGAGTGCCATTTGTA
ACAATCTCCCCAAACCTATTCCAGCAGTTTGTCGAGCACATTCTGGAGCTTCAACTATCT
CTGGTGGAATCATTGCAGGCATTCTTGCCATTATTATTTCTATTTTCCGTTTCATTTAAA
GTTTAAAACCTTTTTCCATAAAAATTATGTGTGGAAGTAAAATAACTTAAAAATTTCTCG
TTTTTAGAATCTCATTTTTTATGTGTGGCAAAAATTTTTGCCTTCTGAATTTTTAAACAT
TCATTGATATTCTCATGATGCACAATAGAATATATTATTAAGAAGCTAATTAGATCTTTT
GATTGTCAATGTTGTATTCACATTCCGTATTAAATTTGTGTCCTTAGTGAAGGAATAAAT
AAAGATTGAATTTCAAAAATAAGAAA

>g812.t4 Gene=g812 Length=208
MAFITKQLYPAMKELKDHVSLELIPFGKSTWNTQGSDTIFNCHHGPEECYGNKIHACAIS
HIQVDSFQTEHTRETLIVDYITCLMSGGFRDQPYALYARKCAEDTHVKKFESIEQCANST
EGSKLLEEMGEKTFKLENPLKSVPTITIRETYDAQIQKQALNDLPSAICNNLPKPIPAVC
RAHSGASTISGGIIAGILAIIISIFRFI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g812.t4 PANTHER PTHR13234:SF59 GAMMA-INTERFERON-INDUCIBLE LYSOSOMAL THIOL REDUCTASE-LIKE PROTEIN 2 180 2.2E-37
3 g812.t4 PANTHER PTHR13234 GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT 2 180 2.2E-37
1 g812.t4 Pfam PF03227 Gamma interferon inducible lysosomal thiol reductase (GILT) 2 104 1.0E-22
6 g812.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 188 -
7 g812.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 189 207 -
5 g812.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 208 208 -
4 g812.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 185 207 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values