Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenylate kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8123 g8123.t2 TTS g8123.t2 28676169 28676169
chr_2 g8123 g8123.t2 isoform g8123.t2 28676223 28677017
chr_2 g8123 g8123.t2 exon g8123.t2.exon1 28676223 28677017
chr_2 g8123 g8123.t2 cds g8123.t2.CDS1 28676441 28677010
chr_2 g8123 g8123.t2 TSS g8123.t2 28677556 28677556

Sequences

>g8123.t2 Gene=g8123 Length=795
AGGAGACATGTTAAGGGCCGAAATCGCCGGTGGTTCAAAGTTAGGTGCTCAACTGAAAAA
GGTCATGGATGAAGGAAAATTAGTATCAGATGATCTTGTTGTTGACATGATTGATTCAAA
TCTCGATAAACCAGAATGTAAAAACGGTTTCCTACTTGATGGATTTCCCCGAACAGTTGT
TCAAGCTCAAAAGTTGGATGATTTGTTAGAAAAAAGACGTACTGGTCTTGATGCCGTGAT
TGAGTTTGATATTGATGATAGTTTACTTGTGAGACGAATTTGTGGCAGATTGATTCACCA
AAAGAGTGGCAGAAGTTATCATGAAGAGTTTCATCCACCAAAAGTTCCAATGAAAGATGA
TATTACCGGTGAGCCATTAATTCGTCGAAGTGATGACAATGCCGAAGCTCTTAAAAAACG
TCTTGAAGCATATCATTCCCAAACTCGTCCTCTTGCCAATTATTATGCATTGAGGGGAAT
TCATTATAAAATTGATGCATCTCAAAGTGCATCTCGTGTATTTGAGAATATCGATAGCAT
CTTTTTATCTCAACGTCAAAAGAGAGCAGCATTGTAAATGGTGTAGAAAATTTTATCAAA
ATGCTTTTAATGAACACATTAGTTATATAAAAATGACAAAATTACAATAATTTTTAGTGT
TCATCACCTATTTTTGAGAATTTAATATTTTTCCATCATTCGGTTTTAATGGTTTCTAAA
AAAATTTCATTTTTCGTACTCTATACTTAGAAAAAAGAAAAATTGAGAAATATATTAAAT
GAAATAAGTAAAACA

>g8123.t2 Gene=g8123 Length=189
MLRAEIAGGSKLGAQLKKVMDEGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQA
QKLDDLLEKRRTGLDAVIEFDIDDSLLVRRICGRLIHQKSGRSYHEEFHPPKVPMKDDIT
GEPLIRRSDDNAEALKKRLEAYHSQTRPLANYYALRGIHYKIDASQSASRVFENIDSIFL
SQRQKRAAL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g8123.t2 CDD cd01428 ADK 1 167 4.21454E-69
11 g8123.t2 Coils Coil Coil 125 145 -
10 g8123.t2 Gene3D G3DSA:3.40.50.300 - 1 187 1.6E-65
5 g8123.t2 Hamap MF_00235 Adenylate kinase [adk]. 1 180 37.741356
3 g8123.t2 PANTHER PTHR23359 NUCLEOTIDE KINASE 1 177 5.6E-66
4 g8123.t2 PANTHER PTHR23359:SF191 ADENYLATE KINASE 4 1 177 5.6E-66
8 g8123.t2 PRINTS PR00094 Adenylate kinase signature 48 64 5.8E-17
7 g8123.t2 PRINTS PR00094 Adenylate kinase signature 127 142 5.8E-17
6 g8123.t2 PRINTS PR00094 Adenylate kinase signature 144 158 5.8E-17
2 g8123.t2 Pfam PF00406 Adenylate kinase 1 156 2.8E-41
1 g8123.t2 Pfam PF05191 Adenylate kinase, active site lid 94 129 5.6E-16
13 g8123.t2 ProSitePatterns PS00113 Adenylate kinase signature. 48 59 -
9 g8123.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 180 1.13E-23
14 g8123.t2 TIGRFAM TIGR01351 adk: adenylate kinase 1 178 3.0E-57

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016776 phosphotransferase activity, phosphate group as acceptor MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0004017 adenylate kinase activity MF
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values