General information for g8124.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8124 is located on chr_2: 28678322..28678938 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8124 | g8124.t1 | TSS | g8124.t1 | 28677651 | 28677651 |
| chr_2 | g8124 | g8124.t1 | isoform | g8124.t1 | 28677708 | 28678322 |
| chr_2 | g8124 | g8124.t1 | exon | g8124.t1.exon1 | 28677708 | 28678125 |
| chr_2 | g8124 | g8124.t1 | cds | g8124.t1.CDS1 | 28677708 | 28678125 |
| chr_2 | g8124 | g8124.t1 | exon | g8124.t1.exon2 | 28678195 | 28678322 |
| chr_2 | g8124 | g8124.t1 | cds | g8124.t1.CDS2 | 28678195 | 28678322 |
| chr_2 | g8124 | g8124.t1 | TTS | g8124.t1 | 28678445 | 28678445 |
Sequences
>g8124.t1 Gene=g8124 Length=546
ATGTCAGTAACATTTACACAAGAACAGTTTAATGTGAAAGCTTTAGAATTTCTAGAAATG
TCAGAGAAAGTGCATGACACATGGCAAAAAGAAGAGAAAGAGAATACTCTATTTTTAGTT
AAAAACTATAAATTTACTTTTAAAAAAGAGCCTTTGAATGATGCTGATGATATTTGTGCT
ATTCAAATGCTTAGTGAAGTGTTTTTAATAGAGTATCATGTGCTTTTACATCCAAGTTAT
AAAGTACCCACTATATATTTTAATGCTTATAAAAATGACAAATTAATAGATTTAAATGAT
ATAAAACTCTTGTTTTGTGATGATTATGATAAGGAGAAATATGAAATCTACAATTTATTA
TCACAATCAGAACATCCTATTTTGTTTAGACCATTTTTTATGATACATCCATGCAAAATT
GGTGAAGTACTTGGCAAATTCACTGAAACGAGAAATTTCATTATCACCTTTCTCACACTT
TATGGACCATCATTAGTCGGACTGAAATTGAATAATGAATATGAGAAATTTTTCATAAAA
GACTAA
>g8124.t1 Gene=g8124 Length=181
MSVTFTQEQFNVKALEFLEMSEKVHDTWQKEEKENTLFLVKNYKFTFKKEPLNDADDICA
IQMLSEVFLIEYHVLLHPSYKVPTIYFNAYKNDKLIDLNDIKLLFCDDYDKEKYEIYNLL
SQSEHPILFRPFFMIHPCKIGEVLGKFTETRNFIITFLTLYGPSLVGLKLNNEYEKFFIK
D
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g8124.t1 | Coils | Coil | Coil | 179 | 181 | - |
| 3 | g8124.t1 | Gene3D | G3DSA:3.30.1460.50 | - | 4 | 165 | 1.5E-5 |
| 2 | g8124.t1 | PANTHER | PTHR14957 | UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 | 53 | 175 | 2.7E-23 |
| 1 | g8124.t1 | Pfam | PF03987 | Autophagocytosis associated protein, active-site domain | 62 | 164 | 2.7E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K17888 (ubiquitin-like-conjugating enzyme ATG10)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
