General information for g813.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been not been annotated.
Parent gene
- The parent gene g813 is located on chr_3: 6157932..6158279 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g813 | g813.t1 | TTS | g813.t1 | 6157843 | 6157843 |
| chr_3 | g813 | g813.t1 | isoform | g813.t1 | 6157932 | 6158279 |
| chr_3 | g813 | g813.t1 | exon | g813.t1.exon1 | 6157932 | 6158066 |
| chr_3 | g813 | g813.t1 | cds | g813.t1.CDS1 | 6157932 | 6158066 |
| chr_3 | g813 | g813.t1 | exon | g813.t1.exon2 | 6158130 | 6158279 |
| chr_3 | g813 | g813.t1 | cds | g813.t1.CDS2 | 6158130 | 6158279 |
| chr_3 | g813 | g813.t1 | TSS | g813.t1 | 6158356 | 6158356 |
Sequences
>g813.t1 Gene=g813 Length=285
ATGACAAAATTAACAGAATGGCTTGTGGCTTTATCAGTATTCTTTGGAATATATTTAGCA
ATTATTACAAAACAATTTAAACATTCATTTTTTGAGGAGCACTTATTTGAAATAAAAATT
TTGCCACTTGTTCTTATCTTTTTACTTGGTATTTATGCTGTGACTACAGTTTTATACAGA
ACTTTAACATTCAATGAATGCAAAGAAGCAGCTGAAGAATTACAGAAAGAAATCATTGAA
GCCAAAAAAGACTTGTCATCAAAAGGAATGAAATTTGATGATTGA
>g813.t1 Gene=g813 Length=94
MTKLTEWLVALSVFFGIYLAIITKQFKHSFFEEHLFEIKILPLVLIFLLGIYAVTTVLYR
TLTFNECKEAAEELQKEIIEAKKDLSSKGMKFDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g813.t1 | Coils | Coil | Coil | 64 | 91 | - |
| 2 | g813.t1 | PANTHER | PTHR16433 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 3 | 1 | 92 | 1.6E-16 |
| 1 | g813.t1 | Pfam | PF08285 | Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) | 1 | 91 | 2.1E-27 |
| 6 | g813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 10 | g813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 26 | - |
| 8 | g813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 27 | 37 | - |
| 9 | g813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 38 | 59 | - |
| 7 | g813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 60 | 94 | - |
| 4 | g813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 25 | - |
| 3 | g813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 62 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
KEGG
Orthology
- This transcript has been annotated with K09659 (dolichol-phosphate mannosyltransferase subunit 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
