Gene loci information

Transcript annotation

  • This transcript has been annotated as Autophagy-related protein 2 homolog B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8130 g8130.t1 TTS g8130.t1 28699469 28699469
chr_2 g8130 g8130.t1 isoform g8130.t1 28700013 28709967
chr_2 g8130 g8130.t1 exon g8130.t1.exon1 28700013 28700291
chr_2 g8130 g8130.t1 cds g8130.t1.CDS1 28700013 28700291
chr_2 g8130 g8130.t1 exon g8130.t1.exon2 28700347 28700445
chr_2 g8130 g8130.t1 cds g8130.t1.CDS2 28700347 28700445
chr_2 g8130 g8130.t1 exon g8130.t1.exon3 28700512 28700666
chr_2 g8130 g8130.t1 cds g8130.t1.CDS3 28700512 28700666
chr_2 g8130 g8130.t1 exon g8130.t1.exon4 28700738 28701735
chr_2 g8130 g8130.t1 cds g8130.t1.CDS4 28700738 28701735
chr_2 g8130 g8130.t1 exon g8130.t1.exon5 28701794 28703947
chr_2 g8130 g8130.t1 cds g8130.t1.CDS5 28701794 28703947
chr_2 g8130 g8130.t1 exon g8130.t1.exon6 28704006 28704129
chr_2 g8130 g8130.t1 cds g8130.t1.CDS6 28704006 28704129
chr_2 g8130 g8130.t1 exon g8130.t1.exon7 28704186 28704657
chr_2 g8130 g8130.t1 cds g8130.t1.CDS7 28704186 28704657
chr_2 g8130 g8130.t1 exon g8130.t1.exon8 28704717 28704927
chr_2 g8130 g8130.t1 cds g8130.t1.CDS8 28704717 28704927
chr_2 g8130 g8130.t1 exon g8130.t1.exon9 28704999 28705262
chr_2 g8130 g8130.t1 cds g8130.t1.CDS9 28704999 28705262
chr_2 g8130 g8130.t1 exon g8130.t1.exon10 28705323 28706474
chr_2 g8130 g8130.t1 cds g8130.t1.CDS10 28705323 28706474
chr_2 g8130 g8130.t1 exon g8130.t1.exon11 28706540 28706642
chr_2 g8130 g8130.t1 cds g8130.t1.CDS11 28706540 28706642
chr_2 g8130 g8130.t1 exon g8130.t1.exon12 28706697 28706852
chr_2 g8130 g8130.t1 cds g8130.t1.CDS12 28706697 28706852
chr_2 g8130 g8130.t1 exon g8130.t1.exon13 28707810 28707981
chr_2 g8130 g8130.t1 cds g8130.t1.CDS13 28707810 28707981
chr_2 g8130 g8130.t1 exon g8130.t1.exon14 28709797 28709967
chr_2 g8130 g8130.t1 cds g8130.t1.CDS14 28709797 28709967
chr_2 g8130 g8130.t1 TSS g8130.t1 28710523 28710523

Sequences

>g8130.t1 Gene=g8130 Length=6510
ATGCTGTGGTTTAACATAGGAATTAGTGATTTTATAAAGAAGCGAGTGTGCAAATTTTTA
CTAAATAGATATCTGGGAAATTATTTTGAGGAAAAGCTTACAGTGAATCAAATTTGCCTT
GATTTATACAATGGCAAAGGTTCTGTGGCAAATGTAAAATTATGTTGCGAGGCAATTAAC
AGTTTATTTGAAGCACAAGGATGGGATTTTGAAATTACAAATGGCGAGATTGGCTCGCTT
GCGGTTGACATACCGTGGAATAGTCTTATGTCAGAGGATTCGGTTGTTGAAGTAAATAAT
TTGTACATTTGCCTTAGACCACAAGCACGCGCTAAAGATGATGGGACTACAATGCTTGAA
TCAATGTGGAGCTCAATGAGCTCATCAATGCAACTCGCGCAAGAATGTTTAGAGAAAAAT
GAGGATCCAGAACTCGAAGTCCCATCAAGCTCATCAAATTTGGAGGGATTGGAAAAATTC
GCACAAACTATTGATAATATTTTGATTCGAGTTAAAGTGAAACTAATAAACACTACAATA
AGATTGGAATATCTTCCGAAAGATTCAAATACAGGAATTGCAATCATAGTTAAAATTAAA
AGTTTAGGCTATCAGAATGAAGCAAGAAATGATGCACCTGATAAAGAGGACAGTGAGAAG
AGTGATCAGAAAACAATTGTATTTTCAACACATTCTTCTCATTATATTACATTAGATGAT
ATTTCTTTCTATTCTGAGGAATTTCGAATAGGTTCCAAGAAAGAAGAAATAATAGTGACA
AAAAGAAGTCGTCATAGTTCCAGTAAATCAGAAAATGAAAATGTCGTTGATGATGAACAG
GAGGAAGAAGACTCATCGTCATTAGATCCATTTGCTAGTGCTATTTCAAGTTTCTCACCA
GACAATGAAATGTTTTATAGTCAGAGCACGATGACAGAAAATGAGTGTAAAAATCGAAAA
ATAGAAGAAAGTGATGATGATGAATGTGAAGGTGAAGAAATTCACAGATCGGAAATGATA
TTGATGGGATGCATGAAGAGTAGACAAGAAATTAGAATTAACATGAAATTAGATGAAAAC
ATTGCTGGGCCAAAAGTATCACTTGAAGTTACATTCGGTAGCCTTTTGCTCTTTTTTACA
CCACGCCAATTTCACATGTTGCTTTTACTCTGTGATATTTTACTCAACGGTGAGGAGACG
CCATCGAGTAGTACTGATGCAGACGAAAACAATAAACATTTATTAAGAGAAAAATTGAAA
GCGGCAGAAGAAAAAAGAAAACATTATAGTGGAAATTTGCTGAATCAGCAAACGTGGGCT
GGTGAAGATTACGATTGCTCGAGTGAGATAACAAACGTGAGAGGTGTGCATGGTTTTAGA
CCAGTTGGTAGTGATTCAATTCTATCTTCAAATAGCTCAATGACAAGTTCTATGCAATCA
TCAGCCAGTCAAATGACATCACACTCAAATAGACATCGACGAGCAATTGAAAGAGATCAA
AATGCAGACATTTCGCATTACAATATTCGCATTGCTGGTGTTTACTTAGTTTTGTTACAT
GATGATATTTTAATAGCAGAAAATGATGAAAATGATGAATTGGTTCCATTAAAAGAAGCA
AGTGTTGAAAATTTAAGATGTCGATGTGAACATTTCTTCAATTATACTTCTAATTTTATC
AATACATGTAGCACCAGTGATTTAATAAAAATTGGAGTAATTTTAAACAAAGCCTGTGAT
AACAATCATTTGAGAATCATGTTAGCGCCTATAATTATAAGTGGCGAAGAAAGACGCACA
GAAAAAGGAAATAGAACGAAATTAAATATTTCTATATCGAGAGCTGAAGTAAGAGAAATG
TTGGATGGAATGTCATTGCCTATTATTGATTTTATGCGCAAAGACACGACAGCTGAAATT
TCGAAACTGCCTGAGGTCTCAATTACTTTAGAGAAAACCTTTTATGTACTAAAAAGCTCA
TCGGGACGACAATATATGGCACCGAGATTAAATGTCGAAATTGCACTCGGCACAGAAACT
GAGACGACTTTTGCTTTTGACATTTCAGTTTTTGATCGCATTCATGCTCTATTCTCATCG
CCTTTTAGCTTCTATTTAAGTGCATCAAACGACCATGAGATTCTTAATGATCTCTCACCC
AATTCACAACGGAAAGTTCAATCAAAATCGGAAATCAAACTTTTGGTTGAAAATTTAAAA
TTAATTCTTTTCTTTCCAATTGTTGATATGCGACCTCTTAATGATGTTGACAGATGCCCA
TATTGGAAACGAAACGTTCGATCTGATTTTCTGCAAATAAAATTCAAAGAATTTAAATTA
AATTTAATATCCAGCATTTATGACATTATTGCAAAGGAAATCAGATTCTTTTATAGCGAA
TCTGAAAAGCATTCTCCAATATATTTTGCCAAGGCTTCTTTTTATGAGAATATAACGAGT
AAATTTTATCCTGCATCTATAGAATATCCAAGAATAATTATCACACTTCCAAGTGATACA
CAATTAAAAGAGATGAATGAAGAATTTATAAAAGACCATCGTAATTTGAAAGATGACTCT
GACAGTGACCCAACCAGTGAAAATATTAAAATTAAACCGAATTTGGAAAAAGATTCAACA
CCATTTAGTCGAAAAAGGGTATGCAGAGAAAGTGATACACCACATAATAAAAGTGATGAA
GATGAATCAGAAATTTTACTTATACCTGGTGACCGTGAAGAATTAAAACATTTCTGTGGA
AGTGCATTCAAATTTTCGAAACTTCAAATCAAACTGGATCTTCCTATTTTATCAATACAA
TTAAAATCAAAACATTTTTATGAGGTCTTTTATAATCGTATAGTATCGGATATTTTAATG
TGGGAATCAAGTGTACCGAAACCATCAAAATCAGAAATTACGCTCAAGAAGCAACCTGAA
TCATTGATGACTGCTGGAATGATGGACTCAATTTACGCACCATTCACAATGTGTAAAAGT
AACATAAATTTTGAATCAAGTTCGTCGGCAACAAATTCAGAAAGCGATAGTGACAATGAT
CCTGTATTTTATTCTGTCTATGATCCATCACGTTCAAGAGTTAAGAGTATGCTTTCTGAT
ATTTATCAAAATGATTATAGTAGTGCAGTAGCTTTGGAACTGTCAATTGGAAAGGGAGCA
ATCACAATGTATGTACCAGTTAGAGATGCACAAAATCATGTAATTCCTGGTCAACTTGGT
GAGTTTGTCATCAAAGCAAATTCAGCTTCTATTTTCTCAGTCAGTAGTTATCATGGAAAT
ACAAATCTCGGTTACTTTTGTATACAATCTGGAAATGTTGAAATTTATCATTGTGGATTA
CTTCCTGTGCCAATTCAAAATCCTCCTCTAAGAGATATGAACTGCTCCCTTCCATCTTGG
CTAAACGCAATTATCTATCCAACCCCTAAAAATTTAACGCTTTGTGAAAACAAACAACCA
ATAAAAAGAGACATGCTGTCCCTTGCTGTTCAGATAAAAGCTAATCCTGATCAAGGATTA
AAAAGAATAAAAGTTTCTGTTGGAGTTCAAAATGCAACTTTGCGATATTTTTCAACCTTA
TCTGAACATTTGTGGCTTACACAATTAATGGATATGTTCGATGTGAAAGAAGATATTGTT
CCTGGTTACACACCATCAACAAATTTGACAGAATTACATTTACATTTATGGAATTCTAAT
GTTGACTATCGTCCATTGAGATATCCATTCAGGGCAATTGTAAATATAGGCACATTGATG
ATAAGTTCAAATCTTGCAACTGGTAGTGTCGGCTGTACTCTGAGATTTGTTGCTGAAGAT
GCAACTCTTTGTATGGCACCACACGTATTGGAAGAAAAACAAGCAGATTGCAATAAAATC
ACTTCATTGCCTTGTAGTGAATTAGTGTGTGTAGCCGACTTGGGATTGTTTGAAATTTCA
CTAAAACTGAACGAAAAAGTCACACCACTATCACCTAAGTTTGATCTCCGAGCAGCAATT
AAAGATGTCAATGTTAGAACTTGTAGTGATTCTGGCAGAGCTTTACTTGAATTTATTAGT
TATTTGGCATCCGAAGGTGATTTAATTGATGATTGTAATCAAGAAGATGACAAAAGCGAA
ACATCAAGCATTATGCAAACAAACGATGATGAGTTACTTTTAAAAGAACCAATAAATGAT
ATTCCTGAAGTGACAGAATCCCAACAGAAACATGTCAACACATTAATGGCGGATGCAATG
GAAGAAAACATTTATATTCCAAGTACATCAGGGACAAATAATGATTCGGCTGATTCTGAT
GAACCAATTGATCTTGGAACAGAAGTTTTTTTCTTTCCTGATGAACAGACAAAGAAAGAA
ATCAAATTTGGTGGAGCGATTCGTAAAATGGATAGTTACAAACGTAGATGTGCCAGTGAA
GACTCAATAAGTATTGACTCTTCGAGTTATAGAGAAGATGAAGAAGTGTTTGTTCGACGG
TATCAACCAAAAGATGAAGATGCAGGTAGTGTTAACACTGAAATGAGAGAATTACTTGAT
TTTGAGACATCTGTAATGGGGAAATTAAAAGATCCGCAAGAAGATTTTGATCCATTACCA
CAAGTTGAAATGGATCTTGGTGATATTTCAAAATATGAAGCAACAATGTCTGCTAAACCA
ATGCAAGGAACAACAAAAAAAAGCTGTTCTGAATCTGATGATGATTTTTGTATTGTGGCT
GATGAAGAGAGACCTTGTTATAATGATGTTCCTGTGATGCCAGAGGATCCAATAAGAATT
GTGGATAATCATTTCAGTGCACCACACGGAAAACCTGATTTGCTAAAAGCACCTGCTGAT
TTTCCAATGGCCGTTCAGAGATATACACTTTGTGAAATGACTTTGGTATGGAGTTTATAT
GGTGGTCGCGATTTTGATGAAAATGATAGAAAGAAAGAACGTGAAGAAAGAGAAGAATTA
AATAGAAGAGCGTTTTCAAATTATCCAATGTCAGAAGTATATAAAATGGGAGTGTCTTAT
TCAAAAGGTTCACCAAGTCTCACATTAGGAGGAAGCAGTCAAAGCAAACTAACTTGGAAA
ACAAGAGGTGGTTATGGTAGAAAGCATGATGTTTTAATGGAAATTCATCTTAACAAAGTT
AGATTTTCACATGAAACATATCCTACAACAACAGAACAAGCATCTCGTCAAGTTCTCCTA
ATAACAGAACTAGAAATTCGTGATAAATTAGCAATATCAAACATTAATAAATTTCTTTAT
CATCCTACTGTTGGCTTTAGAACTCGTCAAGGAAATAATCATATGGTTGTAGTCAAAGCA
CTGCACATACGACCAGAAAGACAGCTTAAGACACAAGAATGTTGCTTGAGGATTTCTCTG
TTGCCAATTCGTCTCAATATTGATCAAGACTCGTTACTTTTTATGATCAACTTTTTCAAT
GAACTTAGTGGTGGTAGTGATTTAAATGAATCGAAAACAGCTCAAACTGCTGTTGTAGCG
AAAGTTCATCAACCTCCCGTAATGATGGTTGAATTGCCTGAAGCAGCACAGGAACTTCAA
GCTCGTAAAATGGTTTCTGAAAATTTGAGTCTTTTGCTCAATGACGAAAATAAAAACACA
AAAGATACTTCAGACACGACAAGTGAAACAACTCAATCTGATTCAGCACCTATTTATTTC
CGACAAATAATTTTCAGTCCTGATGTGCCAATAAGACTCGATTATCAAGGCAAGAGAGTA
GAACTATCGCATGGACCACTTGCTGGTCTTCTTATGGGACTTGGCCAACTTCAATGTTCA
GAAATTCGTTTGAAGAAAATATCCTATCGTCATGGGATTTTAGGTGTTGATCGTTTGGTA
AATTTTCTCATTAAGGAATGGCTGGAAGATATTAAAAAAAGACAATTGCCAAATATTCTT
GGGGGTGTTGGCCCAATGTATTCGTTGGTTCAATTATTTCAAGGTATTTTCGATTTGTTT
TATTTACCATTCGAGCAATACCAAAAAGATGGTAGAATTGTAAGAGGTATTCAGCGGGGC
GCACAAAGTTTTTCAGCAAGAACAGCATTAGCAGCATTAGAGATTACTTCGAGGATTATT
TATTTGTTGCAAATTACAGCTGAATCAGCTTATGATTTGCTTTCGCCAGGGCCTTCTGTT
CGTCGTCGCGTGAACCGTAAAGGGAAACGTAAAAGAATTCATCCACCACAGGATATTCGT
GAAGGAATGTCAAATGCATACTACATCGTAAAAGATGGAATTGGCGATACAGCACAAACA
ATTTTACAGATGGCAGCTCTTGAACACGATCAAAAAGGTTATACTGGTGCAGTTGGTGCA
GTTTTAAGACAAGTTCCACCCACAATGGTGCGACCAATAGTTTTGGCAACACAAGCCTCA
AATCAAGTACTCGGCGGTTTAACCAGTCAGCTGATTCCAGATGCAAGAATAGAGGCAAAA
GAGAAGTGGAAAGACGACAGTGATAATTAA

>g8130.t1 Gene=g8130 Length=2169
MLWFNIGISDFIKKRVCKFLLNRYLGNYFEEKLTVNQICLDLYNGKGSVANVKLCCEAIN
SLFEAQGWDFEITNGEIGSLAVDIPWNSLMSEDSVVEVNNLYICLRPQARAKDDGTTMLE
SMWSSMSSSMQLAQECLEKNEDPELEVPSSSSNLEGLEKFAQTIDNILIRVKVKLINTTI
RLEYLPKDSNTGIAIIVKIKSLGYQNEARNDAPDKEDSEKSDQKTIVFSTHSSHYITLDD
ISFYSEEFRIGSKKEEIIVTKRSRHSSSKSENENVVDDEQEEEDSSSLDPFASAISSFSP
DNEMFYSQSTMTENECKNRKIEESDDDECEGEEIHRSEMILMGCMKSRQEIRINMKLDEN
IAGPKVSLEVTFGSLLLFFTPRQFHMLLLLCDILLNGEETPSSSTDADENNKHLLREKLK
AAEEKRKHYSGNLLNQQTWAGEDYDCSSEITNVRGVHGFRPVGSDSILSSNSSMTSSMQS
SASQMTSHSNRHRRAIERDQNADISHYNIRIAGVYLVLLHDDILIAENDENDELVPLKEA
SVENLRCRCEHFFNYTSNFINTCSTSDLIKIGVILNKACDNNHLRIMLAPIIISGEERRT
EKGNRTKLNISISRAEVREMLDGMSLPIIDFMRKDTTAEISKLPEVSITLEKTFYVLKSS
SGRQYMAPRLNVEIALGTETETTFAFDISVFDRIHALFSSPFSFYLSASNDHEILNDLSP
NSQRKVQSKSEIKLLVENLKLILFFPIVDMRPLNDVDRCPYWKRNVRSDFLQIKFKEFKL
NLISSIYDIIAKEIRFFYSESEKHSPIYFAKASFYENITSKFYPASIEYPRIIITLPSDT
QLKEMNEEFIKDHRNLKDDSDSDPTSENIKIKPNLEKDSTPFSRKRVCRESDTPHNKSDE
DESEILLIPGDREELKHFCGSAFKFSKLQIKLDLPILSIQLKSKHFYEVFYNRIVSDILM
WESSVPKPSKSEITLKKQPESLMTAGMMDSIYAPFTMCKSNINFESSSSATNSESDSDND
PVFYSVYDPSRSRVKSMLSDIYQNDYSSAVALELSIGKGAITMYVPVRDAQNHVIPGQLG
EFVIKANSASIFSVSSYHGNTNLGYFCIQSGNVEIYHCGLLPVPIQNPPLRDMNCSLPSW
LNAIIYPTPKNLTLCENKQPIKRDMLSLAVQIKANPDQGLKRIKVSVGVQNATLRYFSTL
SEHLWLTQLMDMFDVKEDIVPGYTPSTNLTELHLHLWNSNVDYRPLRYPFRAIVNIGTLM
ISSNLATGSVGCTLRFVAEDATLCMAPHVLEEKQADCNKITSLPCSELVCVADLGLFEIS
LKLNEKVTPLSPKFDLRAAIKDVNVRTCSDSGRALLEFISYLASEGDLIDDCNQEDDKSE
TSSIMQTNDDELLLKEPINDIPEVTESQQKHVNTLMADAMEENIYIPSTSGTNNDSADSD
EPIDLGTEVFFFPDEQTKKEIKFGGAIRKMDSYKRRCASEDSISIDSSSYREDEEVFVRR
YQPKDEDAGSVNTEMRELLDFETSVMGKLKDPQEDFDPLPQVEMDLGDISKYEATMSAKP
MQGTTKKSCSESDDDFCIVADEERPCYNDVPVMPEDPIRIVDNHFSAPHGKPDLLKAPAD
FPMAVQRYTLCEMTLVWSLYGGRDFDENDRKKEREEREELNRRAFSNYPMSEVYKMGVSY
SKGSPSLTLGGSSQSKLTWKTRGGYGRKHDVLMEIHLNKVRFSHETYPTTTEQASRQVLL
ITELEIRDKLAISNINKFLYHPTVGFRTRQGNNHMVVVKALHIRPERQLKTQECCLRISL
LPIRLNIDQDSLLFMINFFNELSGGSDLNESKTAQTAVVAKVHQPPVMMVELPEAAQELQ
ARKMVSENLSLLLNDENKNTKDTSDTTSETTQSDSAPIYFRQIIFSPDVPIRLDYQGKRV
ELSHGPLAGLLMGLGQLQCSEIRLKKISYRHGILGVDRLVNFLIKEWLEDIKKRQLPNIL
GGVGPMYSLVQLFQGIFDLFYLPFEQYQKDGRIVRGIQRGAQSFSARTALAALEITSRII
YLLQITAESAYDLLSPGPSVRRRVNRKGKRKRIHPPQDIREGMSNAYYIVKDGIGDTAQT
ILQMAALEHDQKGYTGAVGAVLRQVPPTMVRPIVLATQASNQVLGGLTSQLIPDARIEAK
EKWKDDSDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8130.t1 Coils Coil Coil 405 432 -
7 g8130.t1 Coils Coil Coil 1643 1663 -
5 g8130.t1 MobiDBLite mobidb-lite consensus disorder prediction 259 290 -
6 g8130.t1 MobiDBLite mobidb-lite consensus disorder prediction 259 274 -
4 g8130.t1 MobiDBLite mobidb-lite consensus disorder prediction 853 902 -
3 g8130.t1 PANTHER PTHR13190 AUTOPHAGY-RELATED 2, ISOFORM A 1 2163 0.0
2 g8130.t1 Pfam PF12624 N-terminal region of Chorein or VPS13 15 133 1.7E-20
1 g8130.t1 Pfam PF09333 Autophagy-related protein C terminal domain 2074 2164 1.9E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006914 autophagy BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values