Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 4d14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8132 g8132.t6 TSS g8132.t6 28720199 28720199
chr_2 g8132 g8132.t6 isoform g8132.t6 28721154 28722381
chr_2 g8132 g8132.t6 exon g8132.t6.exon1 28721154 28721300
chr_2 g8132 g8132.t6 exon g8132.t6.exon2 28721694 28721805
chr_2 g8132 g8132.t6 cds g8132.t6.CDS1 28721801 28721805
chr_2 g8132 g8132.t6 exon g8132.t6.exon3 28721872 28721978
chr_2 g8132 g8132.t6 cds g8132.t6.CDS2 28721872 28721978
chr_2 g8132 g8132.t6 exon g8132.t6.exon4 28722032 28722381
chr_2 g8132 g8132.t6 cds g8132.t6.CDS3 28722032 28722381
chr_2 g8132 g8132.t6 TTS g8132.t6 28722495 28722495

Sequences

>g8132.t6 Gene=g8132 Length=716
AGTAAACAAAATACTGCACAGGAAGACGAAGATTTTGGCATCAAGAAAAAGAAAGCTCTG
CTTGATCTGTTACTAGAAACAACAGTTGAAGGAAAGCTATTGAGTAATGAAGACATTCGT
GAGGAAATCGACACTTTTATGTTTGAGCAAGTGCACTCGCTTATACACTTTATAACATTG
CGAGATATGAACACATTCAGAAAAAATGTTTTGAAGAAATTGACAGTGTGCTAGGAAATG
ATGGGAAAATTACTATGAAGTCACTTAATGAGTTGAAATATTTAGAACTTGTCTGCAAAG
AATCATTGAGATTATATCCATCTGTTCCAATTTTTGGTCGAAGAACAGTTGAAGAAATGA
TGATAAATGATAAAATGATACCAAAAGATACAACTCTTCTAATGCTGCCTTACTTTATGG
CAAGAGATCCAGAAATTTGGCAAAATCCTGAAAAATTTATTCCTGAAAGACACGCTGTTG
AAAAGGATAACGAAGATTCGCAAGTTTTTACATACATTCCTTTCTCGGGTGGTTACCGAA
ATTGTATTGGACAAAAATTCGCTATGTTAGAACTTAAATCGACCGTCTCAAAAGTAGTAT
TGAATTACAAATTAAGTGTAAAAGAAAATTTCACTCCTGAAGACGCTCTTGAACTTGTCA
TAAAAAGTACTAATGGAATAATGCTCAAAATTGAAAGTAGAAAATTAAGCAATTAA

>g8132.t6 Gene=g8132 Length=153
MKSLNELKYLELVCKESLRLYPSVPIFGRRTVEEMMINDKMIPKDTTLLMLPYFMARDPE
IWQNPEKFIPERHAVEKDNEDSQVFTYIPFSGGYRNCIGQKFAMLELKSTVSKVVLNYKL
SVKENFTPEDALELVIKSTNGIMLKIESRKLSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g8132.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 153 3.1E-47
2 g8132.t6 PANTHER PTHR24291:SF143 CYTOCHROME P450 4D1-RELATED 2 149 2.9E-45
3 g8132.t6 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 2 149 2.9E-45
10 g8132.t6 PRINTS PR00465 E-class P450 group IV signature 7 23 3.1E-16
5 g8132.t6 PRINTS PR00385 P450 superfamily signature 12 23 9.5E-7
7 g8132.t6 PRINTS PR00465 E-class P450 group IV signature 40 54 3.1E-16
9 g8132.t6 PRINTS PR00465 E-class P450 group IV signature 56 74 3.1E-16
8 g8132.t6 PRINTS PR00465 E-class P450 group IV signature 81 97 3.1E-16
4 g8132.t6 PRINTS PR00385 P450 superfamily signature 88 97 9.5E-7
6 g8132.t6 PRINTS PR00385 P450 superfamily signature 97 108 9.5E-7
11 g8132.t6 PRINTS PR00465 E-class P450 group IV signature 97 115 3.1E-16
1 g8132.t6 Pfam PF00067 Cytochrome P450 1 145 4.2E-42
13 g8132.t6 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 90 99 -
12 g8132.t6 SUPERFAMILY SSF48264 Cytochrome P450 2 149 1.13E-44

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values