General information for g8133.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable cytochrome P450 12b2, mitochondrial.
Parent gene
- The parent gene g8133 is located on chr_2: 28723582..28724549 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8133 | g8133.t10 | TTS | g8133.t10 | 28722419 | 28722419 |
| chr_2 | g8133 | g8133.t10 | isoform | g8133.t10 | 28723255 | 28724549 |
| chr_2 | g8133 | g8133.t10 | exon | g8133.t10.exon1 | 28723255 | 28723353 |
| chr_2 | g8133 | g8133.t10 | cds | g8133.t10.CDS1 | 28723257 | 28723353 |
| chr_2 | g8133 | g8133.t10 | exon | g8133.t10.exon2 | 28723412 | 28723527 |
| chr_2 | g8133 | g8133.t10 | cds | g8133.t10.CDS2 | 28723412 | 28723527 |
| chr_2 | g8133 | g8133.t10 | exon | g8133.t10.exon3 | 28723581 | 28723857 |
| chr_2 | g8133 | g8133.t10 | cds | g8133.t10.CDS3 | 28723581 | 28723857 |
| chr_2 | g8133 | g8133.t10 | exon | g8133.t10.exon4 | 28723924 | 28724036 |
| chr_2 | g8133 | g8133.t10 | cds | g8133.t10.CDS4 | 28723924 | 28724036 |
| chr_2 | g8133 | g8133.t10 | exon | g8133.t10.exon5 | 28724108 | 28724204 |
| chr_2 | g8133 | g8133.t10 | cds | g8133.t10.CDS5 | 28724108 | 28724204 |
| chr_2 | g8133 | g8133.t10 | exon | g8133.t10.exon6 | 28724268 | 28724304 |
| chr_2 | g8133 | g8133.t10 | cds | g8133.t10.CDS6 | 28724268 | 28724304 |
| chr_2 | g8133 | g8133.t10 | exon | g8133.t10.exon7 | 28724366 | 28724549 |
| chr_2 | g8133 | g8133.t10 | cds | g8133.t10.CDS7 | 28724366 | 28724549 |
| chr_2 | g8133 | g8133.t10 | TSS | g8133.t10 | 28724569 | 28724569 |
Sequences
>g8133.t10 Gene=g8133 Length=923
ATGATTTGCAACATTTTGAAGTTTAATAAATTGAGTAATTTGCAAAAGTCATTTGCTTAT
TTTTCCACACAAGTGGCCAAAAAAGAATTTGTTAATTTTCAAGATGAGTGGGAAAATGCA
AGATCATTTGATGAAATTCCTCAACCATCGAAAATTTCATTAATTCGTGCATTTTTACCT
GGAGGAAAATATTACAAACTATCGTTAATTGATATGCATAGATCAATGAACAAAGAATAT
GGAACAATGGTTAAATTTCCTGAAGTTCTTGGAAGACGTGGAATGGTTTGCAGTTATAAT
GTCGAAGATGTAGAAAAGCTGTTTAGACATGAAGGTCAAACGCCTTATCGTAGAACACTC
GAAACATTGCATCATTATAGAAAAAAATATCGACCTGAAGTTTACGAAGAATATGGAGGT
TTGTTTACAGAACAAGGCGAGTCATGGTATAAGATGCGTACGATTGCTAATCCTGTACTG
TTACAACCAAAAACAATTAAGCAGTACATTCCACAGGTTGATGATGTTTCGAAAGAATTT
ATAAAAATGATCGTTCAAAAACTTGATGCCAACAATGAATGTCCTGAAAATTTCAGTGAT
TATTTGAATTTGTGGAGTCTAGAGAGCATTGCTAATATTTCTCTCGATAGGCGTCTTGGT
ATTGTTAGTGGAAATTATCAAGACGAAATGGCAGAAAGACTCATAAAATCAATTAGACAA
TTCTTTGTTGAAGTCTATGAATTTGAAGTTAATATGTCGGTTTGGAAATATTATGAAACG
AAGGCATTTAAAAATCTGATGAACCTTTATGATGAACTTACCAACATTATATTACATTAT
GTTGAGAAAGCCATTGAAGATATTCAAAAGAAAACTATTCGAAATGACAAAGAAGAAAGT
ATTTTGGAAAAATTGTTAAAGAT
>g8133.t10 Gene=g8133 Length=307
MICNILKFNKLSNLQKSFAYFSTQVAKKEFVNFQDEWENARSFDEIPQPSKISLIRAFLP
GGKYYKLSLIDMHRSMNKEYGTMVKFPEVLGRRGMVCSYNVEDVEKLFRHEGQTPYRRTL
ETLHHYRKKYRPEVYEEYGGLFTEQGESWYKMRTIANPVLLQPKTIKQYIPQVDDVSKEF
IKMIVQKLDANNECPENFSDYLNLWSLESIANISLDRRLGIVSGNYQDEMAERLIKSIRQ
FFVEVYEFEVNMSVWKYYETKAFKNLMNLYDELTNIILHYVEKAIEDIQKKTIRNDKEES
ILEKLLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8133.t10 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 35 | 307 | 0 |
| 2 | g8133.t10 | PANTHER | PTHR24305:SF28 | CYTOCHROME P450 49A1-RELATED | 31 | 305 | 0 |
| 3 | g8133.t10 | PANTHER | PTHR24305 | CYTOCHROME P450 | 31 | 305 | 0 |
| 1 | g8133.t10 | Pfam | PF00067 | Cytochrome P450 | 71 | 296 | 0 |
| 4 | g8133.t10 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 47 | 302 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed