Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 CYP12A2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8133 g8133.t7 TTS g8133.t7 28722419 28722419
chr_2 g8133 g8133.t7 isoform g8133.t7 28722513 28724549
chr_2 g8133 g8133.t7 exon g8133.t7.exon1 28722513 28722687
chr_2 g8133 g8133.t7 cds g8133.t7.CDS1 28722513 28722687
chr_2 g8133 g8133.t7 exon g8133.t7.exon2 28722746 28723143
chr_2 g8133 g8133.t7 cds g8133.t7.CDS2 28722746 28723143
chr_2 g8133 g8133.t7 exon g8133.t7.exon3 28723197 28723353
chr_2 g8133 g8133.t7 cds g8133.t7.CDS3 28723197 28723353
chr_2 g8133 g8133.t7 exon g8133.t7.exon4 28723412 28723527
chr_2 g8133 g8133.t7 cds g8133.t7.CDS4 28723412 28723527
chr_2 g8133 g8133.t7 exon g8133.t7.exon5 28723581 28723857
chr_2 g8133 g8133.t7 cds g8133.t7.CDS5 28723581 28723857
chr_2 g8133 g8133.t7 exon g8133.t7.exon6 28723924 28724036
chr_2 g8133 g8133.t7 cds g8133.t7.CDS6 28723924 28724036
chr_2 g8133 g8133.t7 exon g8133.t7.exon7 28724108 28724221
chr_2 g8133 g8133.t7 cds g8133.t7.CDS7 28724108 28724200
chr_2 g8133 g8133.t7 exon g8133.t7.exon8 28724351 28724549
chr_2 g8133 g8133.t7 TSS g8133.t7 28724569 28724569

Sequences

>g8133.t7 Gene=g8133 Length=1549
ATGATTTGCAACATTTTGAAGTTTAATAAATTGAGTAATTTGCAAAAGTCATTTGCTTAT
TTTTCCACACAAGTGGCCAAAAAAGAATTTGTTAATTTTCAAGATGAGTGGGAAAATGCA
AGATCATTTGATGAAATTCCTCAACCATCGAAAATTTCATTAATTCGTGCATTTTTACCT
GGAGGTAATTAATAATCAAATTAACATATTTTAAAGATCAATGAACAAAGAATATGGAAC
AATGGTTAAATTTCCTGAAGTTCTTGGAAGACGTGGAATGGTTTGCAGTTATAATGTCGA
AGATGTAGAAAAGCTGTTTAGACATGAAGGTCAAACGCCTTATCGTAGAACACTCGAAAC
ATTGCATCATTATAGAAAAAAATATCGACCTGAAGTTTACGAAGAATATGGAGGTTTGTT
TACAGAACAAGGCGAGTCATGGTATAAGATGCGTACGATTGCTAATCCTGTACTGTTACA
ACCAAAAACAATTAAGCAGTACATTCCACAGGTTGATGATGTTTCGAAAGAATTTATAAA
AATGATCGTTCAAAAACTTGATGCCAACAATGAATGTCCTGAAAATTTCAGTGATTATTT
GAATTTGTGGAGTCTAGAGAGCATTGCTAATATTTCTCTCGATAGGCGTCTTGGTATTGT
TAGTGGAAATTATCAAGACGAAATGGCAGAAAGACTCATAAAATCAATTAGACAATTCTT
TGTTGAAGTCTATGAATTTGAAGTTAATATGTCGGTTTGGAAATATTATGAAACGAAGGC
ATTTAAAAATCTGATGAACCTTTATGATGAACTTACCAACATTATATTACATTATGTTGA
GAAAGCCATTGAAGATATTCAAAAGAAAACTATTCGAAATGACAAAGAAGAAAGTATTTT
GGAAAAATTGTTAAAGATAAATAAAAATGCTGCCATAGTCATGACTGCTGATGCTCTTTT
AGCTGGTGTTGATACGACAAGCTCAGCAACAATAGGCATTTTATATTGCTTGGCAAAAAA
TCAAGATAAACAAAACAAATTACGGGAAGAATTGAAATCAATATTAAGGAATGAAAATGA
TGAATTGACTCCAAAAAATATGCAAAACATGCCTTATTTACGAGCATGCATTAAAGAAGG
ATTTCGACTTTATCCACCAACAGTAGGAACTGTGAGAAAAGCTGATCAAGATTTAGTCTT
GTCTGGTTATAAAATTCCGAAAGGAACTGAAGTTGTTATGCCTATAGCTTTATTTCAAAA
AGATTGCTATACACGTGCAAATGAATTCATTCCAGAACGTTGGTTGAAAGAAATTTTAGA
CACAAATTGTCCTCATGCAAAAGAAGCTTCACCATTTTCTTATCTTCCATTTGGGTTCGG
TTCACGAGTATGTATCGGAAAAAGATTGGCTAATCTTGAAATGGAAGTTCTAATAACTAG
GCTTATTCGTGATTATAAAATAGAATGGAATTATCCTGAATTGAAATTCAAAGTTGCTAT
TGTGAATATACCTGATGGTGCATTAAAGTTTAAAATTACTAAAATATAA

>g8133.t7 Gene=g8133 Length=442
MNKEYGTMVKFPEVLGRRGMVCSYNVEDVEKLFRHEGQTPYRRTLETLHHYRKKYRPEVY
EEYGGLFTEQGESWYKMRTIANPVLLQPKTIKQYIPQVDDVSKEFIKMIVQKLDANNECP
ENFSDYLNLWSLESIANISLDRRLGIVSGNYQDEMAERLIKSIRQFFVEVYEFEVNMSVW
KYYETKAFKNLMNLYDELTNIILHYVEKAIEDIQKKTIRNDKEESILEKLLKINKNAAIV
MTADALLAGVDTTSSATIGILYCLAKNQDKQNKLREELKSILRNENDELTPKNMQNMPYL
RACIKEGFRLYPPTVGTVRKADQDLVLSGYKIPKGTEVVMPIALFQKDCYTRANEFIPER
WLKEILDTNCPHAKEASPFSYLPFGFGSRVCIGKRLANLEMEVLITRLIRDYKIEWNYPE
LKFKVAIVNIPDGALKFKITKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g8133.t7 Coils Coil Coil 264 284 -
15 g8133.t7 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 442 2.8E-114
2 g8133.t7 PANTHER PTHR24291:SF155 CYTOCHROME P450 301B1 3 425 3.6E-109
3 g8133.t7 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 3 425 3.6E-109
8 g8133.t7 PRINTS PR00463 E-class P450 group I signature 237 254 5.4E-13
9 g8133.t7 PRINTS PR00385 P450 superfamily signature 248 265 4.6E-11
7 g8133.t7 PRINTS PR00463 E-class P450 group I signature 257 283 5.4E-13
11 g8133.t7 PRINTS PR00385 P450 superfamily signature 302 313 4.6E-11
5 g8133.t7 PRINTS PR00463 E-class P450 group I signature 339 363 5.4E-13
4 g8133.t7 PRINTS PR00463 E-class P450 group I signature 381 391 5.4E-13
10 g8133.t7 PRINTS PR00385 P450 superfamily signature 382 391 4.6E-11
6 g8133.t7 PRINTS PR00463 E-class P450 group I signature 391 414 5.4E-13
12 g8133.t7 PRINTS PR00385 P450 superfamily signature 391 402 4.6E-11
1 g8133.t7 Pfam PF00067 Cytochrome P450 2 416 6.2E-76
14 g8133.t7 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 384 393 -
13 g8133.t7 SUPERFAMILY SSF48264 Cytochrome P450 3 440 9.43E-81

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values