Gene loci information

Transcript annotation

  • This transcript has been annotated as 2-acylglycerol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8135 g8135.t2 TSS g8135.t2 28744788 28744788
chr_2 g8135 g8135.t2 isoform g8135.t2 28744922 28746187
chr_2 g8135 g8135.t2 exon g8135.t2.exon1 28744922 28745119
chr_2 g8135 g8135.t2 cds g8135.t2.CDS1 28744922 28745119
chr_2 g8135 g8135.t2 exon g8135.t2.exon2 28745186 28745283
chr_2 g8135 g8135.t2 cds g8135.t2.CDS2 28745186 28745283
chr_2 g8135 g8135.t2 exon g8135.t2.exon3 28745353 28745425
chr_2 g8135 g8135.t2 cds g8135.t2.CDS3 28745353 28745425
chr_2 g8135 g8135.t2 exon g8135.t2.exon4 28745489 28746187
chr_2 g8135 g8135.t2 cds g8135.t2.CDS4 28745489 28746187
chr_2 g8135 g8135.t2 TTS g8135.t2 28746322 28746322

Sequences

>g8135.t2 Gene=g8135 Length=1068
ATGAATGAAGATAAAATAAGTTTTCTGAGAAAACATGTTGTTATTATCAATTATGTCCGA
TCATTTTTAAAATCAATTAAATTTGCACCAATTAATGTGCCTTTTAATCAAAGATGTGAA
GTTTTTAGCGCTTTTCTATTTATTTCAATGGTCTTGTTTGCTGAAGCATTATGTGTTCTA
ATCATTTATTTTTTACTCTTTCATGGAGGTTTAGTGGGCCAAATATTTTGTATCGGGTAT
TTTGCATTTATGATAAGTGATATAAAAGCAGATGAAACTGGAATAAGAGGTCAAGGATCA
AAATGGGTGCGCTCTTGGAAATGGTGGAAATATTATGCAAACTATTTTCCTGTTAAACTC
ATCAAAACTGGTCTTTTTGCAAATTTTGCAACAAATGCGACAGGATTTAATGAAAATTTT
CCTGGAATAAGGTCAAAAATGTGTACACTTTCATTTCATTTTTATGTGCCATTTTTTAGA
GAGCTTGCTTTCTCGTGGGGTCTAATGTCAGCAAAGTATGTTTCTATAAAACAAGCTCTC
TCTCAATCAACAAATCCTTTAGCAGTAGCAAATCAAGCTGATAAATTTACGAGTAATGCT
GTAGTTTTGGTAGTTGGTGGAGCTCAAGAAGCACTAATGTCTCATCCTGGGAAATATGAA
ATTTTTATAAAAAGTCGCAAAGGATTTATCAAAATTGCGCTTGAAACTGGAGCATCTCTT
GTACCGGTCTTCTCTTTTGGAGAAACCGAGGTTTATGATCAAACACCAAATGAACCAGGG
AGCAAAGTTAGAAGGTTTCAGGAAGCATTTAAAAAATGGACGGGTGTCGCTCCCGCAATT
TTTATTGGTCGAGGATTTTTTCAATATTCTTTTGGTCTCATTCCACGACGTGCTCCGATT
CATACCATTGTTGGTGCACCTATTGCTGTCGAAAAGATTTTATCACCTTCAAAAGAGGAT
ATTGATAATTTGCATCAAAAATTCATTGAAGAACTTGAGAAATTATTTGAAGAGCATAAA
AGAAAATATATTCCAAATGCTGAAAATGTTAAATTGATTATGAGATAA

>g8135.t2 Gene=g8135 Length=355
MNEDKISFLRKHVVIINYVRSFLKSIKFAPINVPFNQRCEVFSAFLFISMVLFAEALCVL
IIYFLLFHGGLVGQIFCIGYFAFMISDIKADETGIRGQGSKWVRSWKWWKYYANYFPVKL
IKTGLFANFATNATGFNENFPGIRSKMCTLSFHFYVPFFRELAFSWGLMSAKYVSIKQAL
SQSTNPLAVANQADKFTSNAVVLVVGGAQEALMSHPGKYEIFIKSRKGFIKIALETGASL
VPVFSFGETEVYDQTPNEPGSKVRRFQEAFKKWTGVAPAIFIGRGFFQYSFGLIPRRAPI
HTIVGAPIAVEKILSPSKEDIDNLHQKFIEELEKLFEEHKRKYIPNAENVKLIMR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g8135.t2 CDD cd07987 LPLAT_MGAT-like 112 341 1.5955E-42
5 g8135.t2 Coils Coil Coil 318 338 -
2 g8135.t2 PANTHER PTHR12317 DIACYLGLYCEROL O-ACYLTRANSFERASE 25 351 1.0E-90
3 g8135.t2 PANTHER PTHR12317:SF0 DIACYLGLYCEROL O-ACYLTRANSFERASE 1 25 351 1.0E-90
1 g8135.t2 Pfam PF03982 Diacylglycerol acyltransferase 79 345 8.3E-80
7 g8135.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 40 -
10 g8135.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 41 65 -
8 g8135.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 66 70 -
9 g8135.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 71 88 -
6 g8135.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 89 355 -
4 g8135.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 45 67 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values