General information for g8136.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Brachyurin.
Parent gene
- The parent gene g8136 is located on chr_2: 28746241..28747343 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8136 | g8136.t1 | TTS | g8136.t1 | 28746198 | 28746198 |
| chr_2 | g8136 | g8136.t1 | isoform | g8136.t1 | 28746241 | 28747343 |
| chr_2 | g8136 | g8136.t1 | exon | g8136.t1.exon1 | 28746241 | 28746298 |
| chr_2 | g8136 | g8136.t1 | cds | g8136.t1.CDS1 | 28746241 | 28746298 |
| chr_2 | g8136 | g8136.t1 | exon | g8136.t1.exon2 | 28746358 | 28746457 |
| chr_2 | g8136 | g8136.t1 | cds | g8136.t1.CDS2 | 28746358 | 28746457 |
| chr_2 | g8136 | g8136.t1 | exon | g8136.t1.exon3 | 28746530 | 28746625 |
| chr_2 | g8136 | g8136.t1 | cds | g8136.t1.CDS3 | 28746530 | 28746625 |
| chr_2 | g8136 | g8136.t1 | exon | g8136.t1.exon4 | 28746775 | 28747242 |
| chr_2 | g8136 | g8136.t1 | cds | g8136.t1.CDS4 | 28746775 | 28747242 |
| chr_2 | g8136 | g8136.t1 | exon | g8136.t1.exon5 | 28747310 | 28747343 |
| chr_2 | g8136 | g8136.t1 | cds | g8136.t1.CDS5 | 28747310 | 28747343 |
| chr_2 | g8136 | g8136.t1 | TSS | g8136.t1 | 28747477 | 28747477 |
Sequences
>g8136.t1 Gene=g8136 Length=756
ATGACTAATTTTCGTAGTGGAAGTAGAATTGCTGGTGGAACAGAAGCATCGCGAAATCAA
TTCCCATTTGCCACAATTTTCTTTATTTATGCTCCAAACGATGATCAATCAATTTGTTCT
GGATCAATTCTTTCAGCTCATTATGTTCTATCAGCAGCTCATTGCTTTACAAATTTAGCT
TCTGCCGATTTACTTGCAGGTGTGCACAATGTTGAAACAGAATTTCCCATATACGAGCTA
ACAATATTCAACTCTGACATTATCATTCATGAATCGTACGACAGAGTTCGTTATACAAAT
GATATTGCAGTTATAAGCACAAGACGATCACCATTTTCATTCACAAGAATTGAAATTCAA
CCAATTAATATCATCCCAAGATCATATGCAAATAGTAATCTTACTGGATATATGGCTAGA
ATTTCAGGATGGGGCCTAACCAGTGATACATCATCCATTAGTCCCGTGCCAAGATATATT
GATGCACCTATCATATCAAATGATGAGTGTGCGAGAACATTCGGTACATTGATAACGAGT
GGAAACATTTGTCTGAGTGGTAGCAATGGCAGATCGACATGTCCAGGGGACAGCGGTGGT
GGAATGACAATAGCTCATGGTAGTACACGAGTCCTTGCTGGAATTGTTAGTTTCGGAAGC
GATAGAGGATGTACATTAGGCTATCCAACTGCCAAAACACGTATTACTGCATTTTATGAT
TGGATTACAAGTAAAACTGGAATTGTGATTTCATAA
>g8136.t1 Gene=g8136 Length=251
MTNFRSGSRIAGGTEASRNQFPFATIFFIYAPNDDQSICSGSILSAHYVLSAAHCFTNLA
SADLLAGVHNVETEFPIYELTIFNSDIIIHESYDRVRYTNDIAVISTRRSPFSFTRIEIQ
PINIIPRSYANSNLTGYMARISGWGLTSDTSSISPVPRYIDAPIISNDECARTFGTLITS
GNICLSGSNGRSTCPGDSGGGMTIAHGSTRVLAGIVSFGSDRGCTLGYPTAKTRITAFYD
WITSKTGIVIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8136.t1 | CDD | cd00190 | Tryp_SPc | 10 | 245 | 1.16237E-55 |
| 8 | g8136.t1 | Gene3D | G3DSA:2.40.10.10 | - | 3 | 247 | 3.8E-53 |
| 2 | g8136.t1 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 5 | 246 | 3.1E-59 |
| 3 | g8136.t1 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 5 | 246 | 3.1E-59 |
| 4 | g8136.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 40 | 55 | 5.2E-8 |
| 5 | g8136.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 97 | 111 | 5.2E-8 |
| 6 | g8136.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 191 | 203 | 5.2E-8 |
| 1 | g8136.t1 | Pfam | PF00089 | Trypsin | 10 | 242 | 3.8E-39 |
| 10 | g8136.t1 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 50 | 55 | - |
| 12 | g8136.t1 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 10 | 247 | 25.038 |
| 11 | g8136.t1 | SMART | SM00020 | trypsin_2 | 9 | 242 | 5.1E-49 |
| 7 | g8136.t1 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 7 | 247 | 7.43E-61 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
